View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1952_low_63 (Length: 245)
Name: NF1952_low_63
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_63 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 34567630 - 34567859
Alignment:
| Q |
1 |
ttattaattatggtaagagaaaaatataaaaatgtattgaagtgtgaaaagagaaaacttcttacccaggatagtatggtgttggaacaagtaaagcatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34567630 |
ttattaattatggtaagagaaaaatataaaaatgtattgaagtgtgaaaagagaaaatttcttacccaggatagtatggtgttggaacaagtaaagcatc |
34567729 |
T |
|
| Q |
101 |
tcctggatttgcaagaatgaaagtcaagagctcattggcagcagtagcaccagcagtgaggacaattctttcataatcaaattttgctttatttcctcta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34567730 |
tcctggatttgcaagaatgaaagtcaagagctcattggcagcagtagcaccagcagtgaggacgattctttcataatcaaattttgctttatttcctcta |
34567829 |
T |
|
| Q |
201 |
attttttccatgaaacttgccattgctttt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34567830 |
attttttccatgaaacttgccattgctttt |
34567859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 59 - 226
Target Start/End: Original strand, 42790103 - 42790270
Alignment:
| Q |
59 |
ttcttacccaggatagtatggtgttggaacaagtaaagcatctcctggatttgcaagaatgaaagtcaagagctcattggcagcagtagcaccagcagtg |
158 |
Q |
| |
|
||||||||| |||||||| || || |||||||| ||||||||||| || |||||||||||||| || || |||||||| || ||||| || || |||||| |
|
|
| T |
42790103 |
ttcttaccctggatagtaaggggtgggaacaagcaaagcatctccggggtttgcaagaatgaaggttaaaagctcattagccgcagttgctccggcagtg |
42790202 |
T |
|
| Q |
159 |
aggacaattctttcataatcaaattttgctttatttcctctaattttttccatgaaacttgccattgc |
226 |
Q |
| |
|
| ||| |||||||| |||||||| | |||||| ||||| |||| ||||||||||||||||||||| |
|
|
| T |
42790203 |
atgactattctttccgaatcaaatgtagctttaccacctcttatttgttccatgaaacttgccattgc |
42790270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 59 - 226
Target Start/End: Original strand, 42799643 - 42799810
Alignment:
| Q |
59 |
ttcttacccaggatagtatggtgttggaacaagtaaagcatctcctggatttgcaagaatgaaagtcaagagctcattggcagcagtagcaccagcagtg |
158 |
Q |
| |
|
||||||||| |||||||| || || |||||||| ||||||||||| || |||||||||||||| || || |||||||| || ||||| || || |||||| |
|
|
| T |
42799643 |
ttcttaccctggatagtaaggggtgggaacaagcaaagcatctccggggtttgcaagaatgaaggttaaaagctcattagccgcagttgctccggcagtg |
42799742 |
T |
|
| Q |
159 |
aggacaattctttcataatcaaattttgctttatttcctctaattttttccatgaaacttgccattgc |
226 |
Q |
| |
|
| ||| |||||||| |||||||| | |||||| ||||| |||| ||||||||||||||||||||| |
|
|
| T |
42799743 |
atgactattctttccgaatcaaatgtagctttaccacctcttatttgttccatgaaacttgccattgc |
42799810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University