View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1952_low_66 (Length: 241)

Name: NF1952_low_66
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1952_low_66
NF1952_low_66
[»] chr4 (12 HSPs)
chr4 (20-233)||(55133970-55134183)
chr4 (20-179)||(34982040-34982199)
chr4 (20-179)||(45172733-45172892)
chr4 (72-122)||(28463743-28463794)
chr4 (72-122)||(32130944-32130995)
chr4 (72-149)||(19661209-19661289)
chr4 (76-122)||(11681902-11681949)
chr4 (76-122)||(11690181-11690228)
chr4 (72-122)||(21168915-21168966)
chr4 (72-122)||(39372816-39372867)
chr4 (76-112)||(21791711-21791748)
chr4 (83-123)||(16072270-16072310)
[»] chr3 (12 HSPs)
chr3 (20-179)||(48627118-48627277)
chr3 (72-179)||(46791852-46791962)
chr3 (20-179)||(43905932-43906075)
chr3 (72-123)||(51939710-51939762)
chr3 (72-122)||(27110962-27111013)
chr3 (72-122)||(29387909-29387960)
chr3 (72-122)||(8364030-8364081)
chr3 (72-110)||(41707210-41707249)
chr3 (72-110)||(23067881-23067919)
chr3 (32-65)||(18408121-18408154)
chr3 (72-112)||(24252487-24252528)
chr3 (72-100)||(27729924-27729952)
[»] chr8 (11 HSPs)
chr8 (20-179)||(34524040-34524199)
chr8 (26-179)||(39698033-39698185)
chr8 (27-149)||(12531407-12531527)
chr8 (20-123)||(23567363-23567465)
chr8 (72-112)||(3445551-3445591)
chr8 (65-123)||(32098325-32098384)
chr8 (68-123)||(41666088-41666142)
chr8 (72-111)||(1003958-1003998)
chr8 (76-122)||(18420770-18420817)
chr8 (72-110)||(43926478-43926517)
chr8 (72-110)||(7857957-7857994)
[»] chr7 (15 HSPs)
chr7 (20-179)||(26282631-26282790)
chr7 (20-179)||(1365825-1365984)
chr7 (20-179)||(40001785-40001943)
chr7 (20-180)||(25609906-25610066)
chr7 (72-122)||(18015736-18015786)
chr7 (72-122)||(46221858-46221908)
chr7 (72-123)||(12251542-12251594)
chr7 (72-123)||(8358449-8358500)
chr7 (72-110)||(4099838-4099877)
chr7 (72-122)||(11672442-11672493)
chr7 (72-122)||(38525043-38525094)
chr7 (72-122)||(33419273-33419322)
chr7 (72-112)||(36796526-36796567)
chr7 (72-101)||(42161277-42161306)
chr7 (83-123)||(32956449-32956489)
[»] chr6 (13 HSPs)
chr6 (20-179)||(1093129-1093288)
chr6 (20-179)||(29308556-29308715)
chr6 (20-176)||(1690722-1690879)
chr6 (20-123)||(31860875-31860978)
chr6 (72-122)||(2618214-2618265)
chr6 (72-122)||(24455078-24455129)
chr6 (98-175)||(5877009-5877085)
chr6 (74-123)||(29400998-29401047)
chr6 (72-123)||(57545-57597)
chr6 (30-65)||(2618285-2618320)
chr6 (72-122)||(6754065-6754116)
chr6 (72-121)||(6360620-6360670)
chr6 (72-122)||(31258612-31258664)
[»] chr5 (14 HSPs)
chr5 (20-179)||(43511434-43511593)
chr5 (20-180)||(20975799-20975960)
chr5 (20-179)||(4734671-4734829)
chr5 (20-179)||(42291970-42292128)
chr5 (20-180)||(3349817-3349976)
chr5 (20-179)||(10591362-10591518)
chr5 (20-179)||(29156005-29156165)
chr5 (20-175)||(5829213-5829360)
chr5 (23-123)||(17514028-17514139)
chr5 (72-122)||(13656067-13656117)
chr5 (72-122)||(26311864-26311915)
chr5 (72-101)||(26377930-26377959)
chr5 (72-123)||(12661161-12661213)
chr5 (72-100)||(36718723-36718751)
[»] chr1 (12 HSPs)
chr1 (20-179)||(12971221-12971381)
chr1 (72-110)||(30899526-30899564)
chr1 (72-122)||(14084855-14084906)
chr1 (72-122)||(17487440-17487491)
chr1 (65-173)||(27703676-27703787)
chr1 (72-122)||(20470586-20470637)
chr1 (72-123)||(29208253-29208303)
chr1 (72-179)||(33124787-33124897)
chr1 (32-65)||(28189327-28189360)
chr1 (72-101)||(48722527-48722556)
chr1 (72-122)||(50552352-50552404)
chr1 (72-179)||(51110256-51110367)
[»] chr2 (16 HSPs)
chr2 (20-180)||(18173029-18173188)
chr2 (20-179)||(15457317-15457475)
chr2 (20-179)||(18916143-18916302)
chr2 (20-179)||(17117726-17117885)
chr2 (20-134)||(38985798-38985911)
chr2 (72-179)||(26151903-26152011)
chr2 (72-122)||(18676466-18676517)
chr2 (20-83)||(21747319-21747382)
chr2 (71-110)||(31273318-31273357)
chr2 (72-122)||(36481264-36481315)
chr2 (72-122)||(6530518-6530568)
chr2 (72-180)||(19367574-19367684)
chr2 (72-110)||(13020292-13020331)
chr2 (72-122)||(12269285-12269335)
chr2 (65-123)||(9029471-9029531)
chr2 (127-179)||(21747899-21747951)
[»] scaffold0035 (1 HSPs)
scaffold0035 (72-122)||(22919-22970)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 55134183 - 55133970
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  55134183 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaatatatatattttttatttaagtgggggtgggtattagagtaaatt 55134084  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaaacttgattaagcgtaagcgtgtttaaacttgaccaaaacg 219  Q
    |||||| |||| ||||||||||| ||||||  ||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  55134083 ttttcgaagacacatagcttttgaaggcccggcttgtttgagcaccttgcaccccctcaaacttgattaagcgtaagcgtgtttaaacttgactaaaacg 55133984  T
Q  220 ggacaattcttctc 233  Q
    ||||||||||||||    
T  55133983 ggacaattcttctc 55133970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 34982199 - 34982040
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    |||||||||||  | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||    
T  34982199 atgtccagatagaaaaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtaggggtgggtattagatttaatt 34982100  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    ||||| ||| ||||||||||||||||||||  |||  |||||||| || |||||||||||    
T  34982099 ttttctgaggcccatagcttttggaggcccggcttgattgagcacattgcactccctcaa 34982040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 45172733 - 45172892
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    ||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||    
T  45172733 atgtccagattggagaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtggatattagatttaatt 45172832  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    ||||  ||| | |||| |||||| ||| ||  |||  ||||||||||| |||||||||||    
T  45172833 ttttttgaggcacataacttttgtaggtccggcttgattgagcaccttgcactccctcaa 45172892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 28463743 - 28463794
Alignment:
Q  72 taacatatatattttttatttaagt-gggggtgggtattagagtaaattttt 122  Q
    ||||||||||||||||||||||||| |||||||||||||||| | |||||||    
T  28463743 taacatatatattttttatttaagtggggggtgggtattagatttaattttt 28463794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 32130944 - 32130995
Alignment:
Q  72 taacatatatattttttatttaagt-gggggtgggtattagagtaaattttt 122  Q
    ||||||||||||||||||||||||| |||||||||||||||| | |||||||    
T  32130944 taacatatatattttttatttaagtggggggtgggtattagatttaattttt 32130995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 19661289 - 19661209
Alignment:
Q  72 taacatatatattttttatttaagtggggg-tgggtattagagtaaattttt--tcggagacccatagcttttggaggccc 149  Q
    |||||||||||||||||||||||||||||| ||||||||| | | |||||||  |  |||||||||||| |||| ||||||    
T  19661289 taacatatatattttttatttaagtgggggatgggtattaaatttaatttttcgttagagacccatagcatttgaaggccc 19661209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 11681902 - 11681949
Alignment:
Q  76 atatatattttttatttaagt-gggggtgggtattagagtaaattttt 122  Q
    ||||||||||||||||||||| |||||||||||||||| | |||||||    
T  11681902 atatatattttttatttaagtggggggtgggtattagatttaattttt 11681949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 11690181 - 11690228
Alignment:
Q  76 atatatattttttatttaagt-gggggtgggtattagagtaaattttt 122  Q
    ||||||||||||||||||||| |||||||||||||||| | |||||||    
T  11690181 atatatattttttatttaagtggggggtgggtattagatttaattttt 11690228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 21168966 - 21168915
Alignment:
Q  72 taacatatatattttttatttaagtg-ggggtgggtattagagtaaattttt 122  Q
    |||||||||||||||||||||||||| |||||||| |||||| | |||||||    
T  21168966 taacatatatattttttatttaagtgtggggtgggcattagatttaattttt 21168915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 39372816 - 39372867
Alignment:
Q  72 taacatatatattttttatttaagtgg-gggtgggtattagagtaaattttt 122  Q
    ||||||||||||||||||||||||||| |||||| ||||||| | |||||||    
T  39372816 taacatatatattttttatttaagtggcgggtggatattagatttaattttt 39372867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 21791711 - 21791748
Alignment:
Q  76 atatatatttttta-tttaagtgggggtgggtattaga 112  Q
    |||||||||||||| |||||||||||||||||||||||    
T  21791711 atatatattttttaatttaagtgggggtgggtattaga 21791748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 16072310 - 16072270
Alignment:
Q  83 ttttttatttaagtgggggtgggtattagagtaaatttttt 123  Q
    ||||||||||| |||||||||||||||||| | ||||||||    
T  16072310 ttttttatttatgtgggggtgggtattagacttaatttttt 16072270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 48627118 - 48627277
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48627118 atgtccagatatgagaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagttaatt 48627217  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    ||||  ||| ||||||||||||||||||||  |||  ||||||||||| ||| |||||||    
T  48627218 ttttatgaggcccatagcttttggaggcccggcttgattgagcaccttgcaccccctcaa 48627277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 46791852 - 46791962
Alignment:
Q  72 taacatatatattttttatttaagt-gggggtgggtattagagtaaattttt--tcggagacccatagcttttggaggcccaacttatttgagcacctta 168  Q
    ||||||||||||||||||||||||| |||||||||||||||| | |||||||  |  |||  || |||| ||||||||||| ||||| || ||||||||     
T  46791852 taacatatatattttttatttaagtggggggtgggtattagatttaatttttcgttagaggtccgtagcatttggaggcccgacttagttaagcaccttg 46791951  T
Q  169 cactccctcaa 179  Q
    ||| |||||||    
T  46791952 cacaccctcaa 46791962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 43905932 - 43906075
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||||             |||||||||||||||||||| ||||||| || |||||| ||||    
T  43905932 atgtccagataggagaactaaagtctaaaaaaacctcaaacgtg-------------tatatattttttatttaagt-ggggtggataatagagttaatt 43906017  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    ||||   |  | ||||||||||||||| || ||||  ||||||||||| |||||||||||    
T  43906018 tttt--taagctcatagcttttggaggtccgacttgattgagcaccttgcactccctcaa 43906075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 51939710 - 51939762
Alignment:
Q  72 taacatatatattttttatttaagt-gggggtgggtattagagtaaatttttt 123  Q
    ||||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  51939710 taacatatatattttttatttaagtggggggtgggtattagatttaatttttt 51939762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 27110962 - 27111013
Alignment:
Q  72 taacatatatattttttatttaagt-gggggtgggtattagagtaaattttt 122  Q
    ||||||||||||||||||||||||| |||||||||||||||| | |||||||    
T  27110962 taacatatatattttttatttaagtagggggtgggtattagatttaattttt 27111013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 29387909 - 29387960
Alignment:
Q  72 taacatatatattttttatttaagt-gggggtgggtattagagtaaattttt 122  Q
    ||||||||||||||||||||||||| |||||||||||||||| | |||||||    
T  29387909 taacatatatattttttatttaagtggggggtgggtattagatttaattttt 29387960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 8364081 - 8364030
Alignment:
Q  72 taacatatatattttttatttaagtg-ggggtgggtattagagtaaattttt 122  Q
    |||||||||||||||||||||||||| ||||||| ||||||| | |||||||    
T  8364081 taacatatatattttttatttaagtggggggtggatattagatttaattttt 8364030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 41707210 - 41707249
Alignment:
Q  72 taacatatatattttttatttaagt-gggggtgggtatta 110  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  41707210 taacatatatattttttatttaagtggggggtgggtatta 41707249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 23067881 - 23067919
Alignment:
Q  72 taacatatatattttttatttaagtgggggtgggtatta 110  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  23067881 taacatatatatattttatttaaatgggggtgggtatta 23067919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 18408154 - 18408121
Alignment:
Q  32 gagaactaaagtctacaaaaaactcaaacgtgta 65  Q
    ||||||||||||||| ||||||||||||||||||    
T  18408154 gagaactaaagtctagaaaaaactcaaacgtgta 18408121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 24252528 - 24252487
Alignment:
Q  72 taacatatatattttttatttaagt-gggggtgggtattaga 112  Q
    |||||||||||||||||| |||||| ||||||||||||||||    
T  24252528 taacatatatattttttacttaagtcgggggtgggtattaga 24252487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 100
Target Start/End: Original strand, 27729924 - 27729952
Alignment:
Q  72 taacatatatattttttatttaagtgggg 100  Q
    |||||||||||||||||||||||||||||    
T  27729924 taacatatatattttttatttaagtgggg 27729952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 34524040 - 34524199
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  34524040 atgtccagataggagaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagatttaatt 34524139  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    ||||| ||| ||| ||||||||||||| ||  |||  ||||||||||| |||||||||||    
T  34524140 ttttctgaggcccgtagcttttggaggtccggcttgattgagcaccttgcactccctcaa 34524199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 179
Target Start/End: Original strand, 39698033 - 39698185
Alignment:
Q  26 agataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaattttttcg 125  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| || ||||||     
T  39698033 agataggagaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtggaggtgggtattaaagttaa-tttttct 39698131  T
Q  126 gagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    |||||||||| |||||||||| |||||||| |||| |||||| || ||||||||    
T  39698132 gagacccataacttttggaggtccaacttaattgaacaccttgcattccctcaa 39698185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 12531527 - 12531407
Alignment:
Q  27 gataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaattttttcgg 126  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||  | |||||| |    
T  12531527 gataggagaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatctattttttatttaagt-ggggtgggtattagagttga-tttttctg 12531430  T
Q  127 agacccatagcttttggaggccc 149  Q
    ||  |||||||||||||||||||    
T  12531429 aggtccatagcttttggaggccc 12531407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 23567363 - 23567465
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    |||| |||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||| || |||||||| ||||| ||||    
T  23567363 atgttcagataagagaactaaagtctagaaaaacctcaaacgtgtaaaaaagtaccatatatattttttatttaagt-ggagtgggtatcagagttaatt 23567461  T
Q  120 tttt 123  Q
    ||||    
T  23567462 tttt 23567465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 3445591 - 3445551
Alignment:
Q  72 taacatatatattttttatttaagtgggggtgggtattaga 112  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3445591 taacatatatattttttatttaagtgggggtgggtattaga 3445551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 32098325 - 32098384
Alignment:
Q  65 aaagaagtaacatatatattttttatttaagt-gggggtgggtattagagtaaatttttt 123  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||| | ||||||||    
T  32098325 aaagaagtaacatatatattttttaattaagtggggggtgggtattagacttaatttttt 32098384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 41666088 - 41666142
Alignment:
Q  68 gaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatttttt 123  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||| | ||||||||    
T  41666088 gaagtaacatatatattttttatttaagt-ggggttggtattagacttaatttttt 41666142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 1003998 - 1003958
Alignment:
Q  72 taacatatatattttttatttaagtg-ggggtgggtattag 111  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  1003998 taacatatatattttttatttaagtggggggtgggtattag 1003958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 18420770 - 18420817
Alignment:
Q  76 atatatattttttatttaagtgg-gggtgggtattagagtaaattttt 122  Q
    ||||||||||||||||||||||| |||||||||||||| | |||||||    
T  18420770 atatatattttttatttaagtggagggtgggtattagatttaattttt 18420817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 43926478 - 43926517
Alignment:
Q  72 taacatatatattttttatttaagtggg-ggtgggtatta 110  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  43926478 taacatatatattttttatttaagtgggaggtgggtatta 43926517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 7857994 - 7857957
Alignment:
Q  72 taacatatatattttttatttaagtgggggtgggtatta 110  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  7857994 taacatatatattttttatttaagt-ggggtgggtatta 7857957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 26282631 - 26282790
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    |||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26282631 atgtgcagataggagaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagttaatt 26282730  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    ||||| ||| || |||||||||||||||||  |||  ||||| ||||| |||||||||||    
T  26282731 ttttctgaggcctatagcttttggaggcccggcttgattgagtaccttgcactccctcaa 26282790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 1365984 - 1365825
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttt-tatttaagtgggggtgggtattagagtaaat 118  Q
    ||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||    
T  1365984 atgtccagataggagaactaaagtctagaagaaactcaaacgtgtaaagaagtaacatatatatttttatatttaagt-ggggtgggtattagagttaat 1365886  T
Q  119 tttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    |||||||||| ||||||| ||||||||||||  |||  ||||||||||| |||||||||||    
T  1365885 tttttcggaggcccatagattttggaggcccggcttgattgagcaccttgcactccctcaa 1365825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 40001785 - 40001943
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    |||| ||||||  |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  40001785 atgttcagatagaagaactaaagtctagaaaaacctcaaacgtgtaaagaagtaacatatatattttttatttaagtaggggtgggtattagagttaatt 40001884  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    ||||   || ||||||||||||||||||||  |||| ||||||||||| ||||| |||||    
T  40001885 tttt-ttaggcccatagcttttggaggcccggcttaattgagcaccttgcactctctcaa 40001943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 25610066 - 25609906
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    |||| |||||| ||||||||||||||| ||||||| |||| |||||||||||||||||| ||||||||||||||| ||| ||||||||||||||| ||||    
T  25610066 atgttcagataggagaactaaagtctagaaaaaacccaaatgtgtaaagaagtaacatacatattttttatttaaatggaggtgggtattagagttaatt 25609967  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaaa 180  Q
    ||||| | ||| |||| ||||| ||| | | ||||  ||||||||||| ||||||||||||    
T  25609966 ttttctgtgactcataacttttagagactcgacttgattgagcaccttgcactccctcaaa 25609906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 18015736 - 18015786
Alignment:
Q  72 taacatatatattttttatttaagtgggggtgggtattagagtaaattttt 122  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  18015736 taacatatatattttttatttaagtgggggtgggtattagatttaattttt 18015786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 46221858 - 46221908
Alignment:
Q  72 taacatatatattttttatttaagtgggggtgggtattagagtaaattttt 122  Q
    ||||||||||||||||||||||||| ||||||||||||||| | |||||||    
T  46221858 taacatatatattttttatttaagtaggggtgggtattagatttaattttt 46221908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 12251542 - 12251594
Alignment:
Q  72 taacatatatattttttatttaagtgg-gggtgggtattagagtaaatttttt 123  Q
    ||||||||||||||||||||||||||| |||||||||||||| | ||||||||    
T  12251542 taacatatatattttttatttaagtggagggtgggtattagatttaatttttt 12251594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 8358449 - 8358500
Alignment:
Q  72 taacatatatattttttatttaagtgggggtgggtattagagtaaatttttt 123  Q
    |||||||||||||||||||||||||| |||||| ||||||| | ||||||||    
T  8358449 taacatatatattttttatttaagtgagggtggatattagatttaatttttt 8358500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 4099877 - 4099838
Alignment:
Q  72 taacatatatattttttatttaagtggg-ggtgggtatta 110  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  4099877 taacatatatattttttatttaagtgggaggtgggtatta 4099838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 11672493 - 11672442
Alignment:
Q  72 taacatatatattttttatttaagtg-ggggtgggtattagagtaaattttt 122  Q
    |||||||||||||||||||||||||| ||||||| ||||||| | |||||||    
T  11672493 taacatatatattttttatttaagtggggggtggatattagatttaattttt 11672442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 38525094 - 38525043
Alignment:
Q  72 taacatatatattttttatttaagtgg-gggtgggtattagagtaaattttt 122  Q
    ||||||||||||||||||||||||||| | |||||||||||| | |||||||    
T  38525094 taacatatatattttttatttaagtggagagtgggtattagatttaattttt 38525043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 33419273 - 33419322
Alignment:
Q  72 taacatatatattttttatttaagtgggggtgggtattagagtaaattttt 122  Q
    ||||||||||||||||||||||||| ||||||| ||||||| | |||||||    
T  33419273 taacatatatattttttatttaagt-ggggtggttattagatttaattttt 33419322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 36796526 - 36796567
Alignment:
Q  72 taacatatatattttttatttaagtggg-ggtgggtattaga 112  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  36796526 taacatatatattttttatttaaatgggaggtgggtattaga 36796567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 101
Target Start/End: Original strand, 42161277 - 42161306
Alignment:
Q  72 taacatatatattttttatttaagtggggg 101  Q
    ||||||||||||||||||||||||||||||    
T  42161277 taacatatatattttttatttaagtggggg 42161306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 32956489 - 32956449
Alignment:
Q  83 ttttttatttaagtgggggtgggtattagagtaaatttttt 123  Q
    |||||||||||||||||||||||| ||||| | ||||||||    
T  32956489 ttttttatttaagtgggggtgggttttagatttaatttttt 32956449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 1093129 - 1093288
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    ||||||||||| ||||||||||||||| ||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  1093129 atgtccagataggagaactaaagtctagaaaaaactcaaacatgcaaagaagtaacatatatagtttttatttaagtgggggtgggtattagagttaatt 1093228  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    ||||||||| ||||||  ||||| |||||| ||||| ||||||||||| |||||||||||    
T  1093229 ttttcggaggcccataaattttgaaggcccgacttaattgagcaccttgcactccctcaa 1093288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 29308556 - 29308715
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    |||||||||||  | ||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  29308556 atgtccagatagaaaaactaaagtttagaaaaaactcaaacgtgtaaagaagtaccatatatattttttatttaagtgggggtgggtattagagttaatt 29308655  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    ||||||||  || ||| ||| ||||||||| ||||  ||||||||||| |||||||||||    
T  29308656 ttttcggaagcctataacttctggaggcccgacttgattgagcaccttgcactccctcaa 29308715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 1690722 - 1690879
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagag-taaat 118  Q
    ||||||| ||| |||||||||| | || |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| |    
T  1690722 atgtccaaataggagaactaaaatttagaaaaaactcaaacgtgtaaagaagtaacatatatatattttatttaagtggaggtgggtattagagttaatt 1690821  T
Q  119 tttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccct 176  Q
    |||||| ||| |||||||||||||||||| |  |||  ||||||| ||| ||||||||    
T  1690822 tttttctgaggcccatagcttttggaggctcggcttgattgagcatcttgcactccct 1690879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 31860978 - 31860875
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    |||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  31860978 atgtccagatagaagaactaaagtctagaaaaacctcaaacgtgtaaagaagtaacatatatattttttatttaggtgggggtgggtattagagttaatt 31860879  T
Q  120 tttt 123  Q
    ||||    
T  31860878 tttt 31860875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 2618265 - 2618214
Alignment:
Q  72 taacatatatattttttatttaagtg-ggggtgggtattagagtaaattttt 122  Q
    |||||||||||||||||||||||||| ||||||||||||||| | |||||||    
T  2618265 taacatatatattttttatttaagtggggggtgggtattagatttaattttt 2618214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 24455129 - 24455078
Alignment:
Q  72 taacatatatattttttatttaagtg-ggggtgggtattagagtaaattttt 122  Q
    |||||||||||||||||||||||||| ||||||||||||||| | |||||||    
T  24455129 taacatatatattttttatttaagtggggggtgggtattagatttaattttt 24455078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 5877009 - 5877085
Alignment:
Q  98 ggggtgggtattagagtaaattttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccc 175  Q
    ||||| ||||||||||| ||||||| | ||| ||||||||| |||||||||| ||||  ||||||||||| |||||||    
T  5877009 ggggttggtattagagttaattttt-ctgaggcccatagctcttggaggcccgacttgattgagcaccttgcactccc 5877085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 29401047 - 29400998
Alignment:
Q  74 acatatatattttttatttaagtgggggtgggtattagagtaaatttttt 123  Q
    ||||||||||||||||||||||||| ||||||||||| | | ||||||||    
T  29401047 acatatatattttttatttaagtggaggtgggtattatatttaatttttt 29400998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 57597 - 57545
Alignment:
Q  72 taacatatatattttttatttaagtgggg-gtgggtattagagtaaatttttt 123  Q
    |||||||||||| |||||||||||||||| |||||||||||| | ||||||||    
T  57597 taacatatatatcttttatttaagtggggagtgggtattagacttaatttttt 57545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 2618320 - 2618285
Alignment:
Q  30 aagagaactaaagtctacaaaaaactcaaacgtgta 65  Q
    ||||||||||||||||| ||||||||||||||||||    
T  2618320 aagagaactaaagtctagaaaaaactcaaacgtgta 2618285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 6754116 - 6754065
Alignment:
Q  72 taacatatatattttttatttaagtgggg-gtgggtattagagtaaattttt 122  Q
    ||||||||||||||||||||||||||||| ||| |||||||| | |||||||    
T  6754116 taacatatatattttttatttaagtggggagtgagtattagaattaattttt 6754065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 6360670 - 6360620
Alignment:
Q  72 taacatatatattttttatttaagtg-ggggtgggtattagagtaaatttt 121  Q
    |||||||||||||||||||||||||| ||||||| ||||||| | ||||||    
T  6360670 taacatatatattttttatttaagtggggggtggatattagatttaatttt 6360620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 31258612 - 31258664
Alignment:
Q  72 taacatatatattttttatttaagt--gggggtgggtattagagtaaattttt 122  Q
    |||||||||||||||||||||| ||  |||||||||||||||| | |||||||    
T  31258612 taacatatatattttttatttatgtgggggggtgggtattagatttaattttt 31258664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 43511593 - 43511434
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||    
T  43511593 atgtccagataggagaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtggaggtgggtattagatttaatt 43511494  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    ||||| ||| ||||||||||||||||| ||  |||  ||||||||||| |||||||||||    
T  43511493 ttttctgaggcccatagcttttggaggtccggcttgattgagcaccttgcactccctcaa 43511434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 20975960 - 20975799
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaa--ctcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaa 117  Q
    ||||| ||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  20975960 atgtcaagataagagaactaaagtctagaaaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtggaggtgggtattagagttaa 20975861  T
Q  118 ttttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaaa 180  Q
     |||||| ||| ||||||||||||||||||||  |||  ||||||||||| ||||||||||||    
T  20975860 -tttttctgaggcccatagcttttggaggcccggcttgattgagcaccttgcactccctcaaa 20975799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 4734671 - 4734829
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    ||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  4734671 atgtccagataggagaactaaagtctagaaaaaactcaaacatgtaaagaagtaacatatatattttttatttaagt-ggggtgggtattagagttaatt 4734769  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    ||||  ||| ||||||||||||||||||||  |||  |||||||  || |||||||||||    
T  4734770 ttttatgaggcccatagcttttggaggcccggcttgattgagcattttgcactccctcaa 4734829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 42291970 - 42292128
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    ||||||||||| |||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||    
T  42291970 atgtccagataggagaactaaagtttagaaaaaagtcaaacgtgtaaagaagtaacatatatattttttatttaagtgggcgtgagtattagagttaatt 42292069  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    ||||| ||| || |||||||||||||||||  | || ||||||||||| |||||||||||    
T  42292070 ttttctgaggcctatagcttttggaggcccggc-taattgagcaccttgcactccctcaa 42292128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 3349817 - 3349976
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| | | ||||    
T  3349817 atgtccagataggagaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatgtattttttatttaagt-gaggtgggtattacaattaatt 3349915  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaaa 180  Q
    || |||||| ||||||| |||||||||||  ||||  ||||||| ||| ||||||||||||    
T  3349916 ttatcggaggcccatagattttggaggcctgacttgattgagcatcttgcactccctcaaa 3349976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 10591362 - 10591518
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    |||| |||||| ||||||||||||||| |||||||||||||||||||| ||  |||  ||||||||||||||||| |||||||||||||||||||  | |    
T  10591362 atgttcagataggagaactaaagtctagaaaaaactcaaacgtgtaaaaaaagaac--atatattttttatttaaatgggggtgggtattagagttga-t 10591458  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    |||||  |  ||||||||||||||||||||  |||  ||||||||||| |||||||||||    
T  10591459 ttttctaaagcccatagcttttggaggcccggcttgattgagcaccttgcactccctcaa 10591518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 29156165 - 29156005
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatatt-ttttatttaagtgggggtgggtattagagtaaat 118  Q
    |||| |||||| || ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||| | | ||||||||||||| | |||    
T  29156165 atgttcagataggataactatagtctagaaaaaactcaaacgtgtaaagaagtaacatatatatttttttatttaaatagaggtgggtattagatttaat 29156066  T
Q  119 tttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    |||||| |||  ||||| |||||||||| ||   ||  ||||||| ||| |||||||||||    
T  29156065 tttttctgaggtccataacttttggaggtccggtttgattgagcatcttgcactccctcaa 29156005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 5829360 - 5829213
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    ||||| ||||| ||||||||||||||| |||||||||||||||||||        |||| ||||||||||||||| |||||||||||||||  || ||||    
T  5829360 atgtcaagataggagaactaaagtctataaaaaactcaaacgtgtaa--------catacatattttttatttaaatgggggtgggtattaaggttaatt 5829269  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccc 175  Q
    ||||| ||||||||||  |||| |||| |  ||||| ||||||||||| |||||||    
T  5829268 ttttctgagacccataatttttagaggtctgacttaattgagcaccttgcactccc 5829213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 17514028 - 17514139
Alignment:
Q  23 tccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaac-----------atatatattttttatttaagtgggggtgggtattag 111  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||    
T  17514028 tccagataggagaactaaagtctagaaaaacctcaaacgtgtaaagaagtaacattttttttttatatatattttttatttaagtgggggtgggtattag 17514127  T
Q  112 agtaaatttttt 123  Q
    | | ||||||||    
T  17514128 atttaatttttt 17514139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 13656117 - 13656067
Alignment:
Q  72 taacatatatattttttatttaagtgggggtgggtattagagtaaattttt 122  Q
    ||||||||||||||||||||||||||| ||||| ||||||| | |||||||    
T  13656117 taacatatatattttttatttaagtggaggtggttattagatttaattttt 13656067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 26311915 - 26311864
Alignment:
Q  72 taacatatatattttttatttaag-tgggggtgggtattagagtaaattttt 122  Q
    |||||||||||||||||||||||| ||||||| ||||||||| | |||||||    
T  26311915 taacatatatattttttatttaagttgggggtaggtattagatttaattttt 26311864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 101
Target Start/End: Original strand, 26377930 - 26377959
Alignment:
Q  72 taacatatatattttttatttaagtggggg 101  Q
    ||||||||||||||||||||||||||||||    
T  26377930 taacatatatattttttatttaagtggggg 26377959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 12661213 - 12661161
Alignment:
Q  72 taacatatatattttttatttaagtgg-gggtgggtattagagtaaatttttt 123  Q
    ||||||||||||||||||||||||||| |||| | ||||||| | ||||||||    
T  12661213 taacatatatattttttatttaagtggagggtagatattagatttaatttttt 12661161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 100
Target Start/End: Original strand, 36718723 - 36718751
Alignment:
Q  72 taacatatatattttttatttaagtgggg 100  Q
    |||||||||||||||||||||||||||||    
T  36718723 taacatatatattttttatttaagtgggg 36718751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 12971381 - 12971221
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtg-ggggtgggtattagagtaaat 118  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  12971381 atgtccagataggagaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtggggggtgggtattagagttaat 12971282  T
Q  119 tttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    |||||| ||| ||||| ||| ||||||||||  |||  ||||||||||| |||||||||||    
T  12971281 tttttctgaggcccattgctcttggaggcccggcttgattgagcaccttgcactccctcaa 12971221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 30899564 - 30899526
Alignment:
Q  72 taacatatatattttttatttaagtgggggtgggtatta 110  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30899564 taacatatatattttttatttaagtgggggtgggtatta 30899526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 14084855 - 14084906
Alignment:
Q  72 taacatatatattttttatttaagtgg-gggtgggtattagagtaaattttt 122  Q
    ||||||||||||||||||||||||||| |||||||||||||| | |||||||    
T  14084855 taacatatatattttttatttaagtggagggtgggtattagatttaattttt 14084906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 17487440 - 17487491
Alignment:
Q  72 taacatatatattttttatttaagt-gggggtgggtattagagtaaattttt 122  Q
    ||||||||||||||||||||||||| |||||||||||||||| | |||||||    
T  17487440 taacatatatattttttatttaagtggggggtgggtattagatttaattttt 17487491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 173
Target Start/End: Original strand, 27703676 - 27703787
Alignment:
Q  65 aaagaagtaacatatatatttttt---atttaagt-gggggtgggtattagagtaaattttttcggagacccatagcttttggaggcccaacttatttga 160  Q
    ||||||||||||||||||||||||   |||||||| |||||||||||||||| | ||||||||  | |  || ||| ||||||||||||| |||  ||||    
T  27703676 aaagaagtaacatatatattttttttaatttaagtggggggtgggtattagacttaatttttt-tgtggtccgtagtttttggaggcccagcttggttga 27703774  T
Q  161 gcaccttacactc 173  Q
    ||||||| |||||    
T  27703775 gcaccttgcactc 27703787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 20470637 - 20470586
Alignment:
Q  72 taacatatatattttttatttaagt-gggggtgggtattagagtaaattttt 122  Q
    |||||||||||||||||||||| || |||||||||||||||| | |||||||    
T  20470637 taacatatatattttttatttatgtggggggtgggtattagatttaattttt 20470586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 29208253 - 29208303
Alignment:
Q  72 taacatatatattttttatttaagtgggggtgggtattagagtaaatttttt 123  Q
    |||||||||| ||||||||||||||||||||| |||||||| | ||||||||    
T  29208253 taacatatat-ttttttatttaagtgggggtgagtattagacttaatttttt 29208303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 33124787 - 33124897
Alignment:
Q  72 taacatatatattttttatttaag-tgggggtgggtattagagtaaattttt--tcggagacccatagcttttggaggcccaacttatttgagcacctta 168  Q
    |||||||||||||||||||||||| ||||| ||||||||| | | |||||||  |  ||| ||| |||| |||||||||||| | |  |||||||||||     
T  33124787 taacatatatattttttatttaagttggggatgggtattaaatttaatttttcgttagaggcccgtagcgtttggaggcccagcctgattgagcaccttg 33124886  T
Q  169 cactccctcaa 179  Q
    ||| |||||||    
T  33124887 cacaccctcaa 33124897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 28189360 - 28189327
Alignment:
Q  32 gagaactaaagtctacaaaaaactcaaacgtgta 65  Q
    ||||||||||||||| ||||||||||||||||||    
T  28189360 gagaactaaagtctaaaaaaaactcaaacgtgta 28189327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 101
Target Start/End: Original strand, 48722527 - 48722556
Alignment:
Q  72 taacatatatattttttatttaagtggggg 101  Q
    ||||||||||||||||||||||||||||||    
T  48722527 taacatatatattttttatttaagtggggg 48722556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 50552404 - 50552352
Alignment:
Q  72 taacatatatatttttt-atttaagtg-ggggtgggtattagagtaaattttt 122  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| | |||||||    
T  50552404 taacatatatatttttttatttaagtggggggtgggtattagatttaattttt 50552352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 51110256 - 51110367
Alignment:
Q  72 taacatatatatttttt-atttaagtggg-ggtgggtattagagtaaattttt--tcggagacccatagcttttggaggcccaacttatttgagcacctt 167  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||| | |||||||  |  ||| ||| |||| |||||||||||  | |  |||||||||||    
T  51110256 taacatatatatttttttatttaagtgggtggtaggtattagatttaatttttcgttagaggcccgtagcatttggaggcccggcctggttgagcacctt 51110355  T
Q  168 acactccctcaa 179  Q
    |||| |||||||    
T  51110356 acacaccctcaa 51110367  T

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Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 18173029 - 18173188
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    ||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18173029 atgtccatataggagaa-taaagtctagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagttaatt 18173127  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaaa 180  Q
    ||||| |||  |||||||| ||||||||||  |||  ||||||||||| ||||||||||||    
T  18173128 ttttctgaggtccatagctcttggaggcccggcttgattgagcaccttgcactccctcaaa 18173188  T

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Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 15457475 - 15457317
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    |||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  15457475 atgtccggataagtgaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagttaa-t 15457377  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    ||||| ||| |||||| |||||||||||||  |||  ||||||||||| ||||| |||||    
T  15457376 ttttctgaggcccataacttttggaggcccggcttgattgagcaccttgcactctctcaa 15457317  T

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Target: chr2; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 18916143 - 18916302
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    ||||||||||   |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18916143 atgtccagattgaagaactaaagtctagaaaaacctcaaacgtgtaaaaaagtaacatatatattttttatttaagtgggggtgggtattagagttaatt 18916242  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    ||||   || ||||||||| |||||||||| ||||  ||||||||||| |||| ||||||    
T  18916243 tttttttaggcccatagctattggaggcccgacttgattgagcaccttgcacttcctcaa 18916302  T

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Target: chr2; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 17117726 - 17117885
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    ||||||||||| |||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||    
T  17117726 atgtccagataggagagctaaaatctagaaaaaattcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgagtattagatttaatt 17117825  T
Q  120 ttttcggagacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    ||||  | | ||||||| ||||||||| ||  |||  |||||||||||||||| ||||||    
T  17117826 ttttgtggggcccatagtttttggaggtccggcttgattgagcaccttacacttcctcaa 17117885  T

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Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 38985798 - 38985911
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagtaaatt 119  Q
    ||||||||||| ||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||    
T  38985798 atgtccagataggagaa-taaagtttagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtggggtggggtattagagttaatt 38985896  T
Q  120 ttttcggagacccat 134  Q
    ||||| ||| |||||    
T  38985897 ttttctgaggcccat 38985911  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 26151903 - 26152011
Alignment:
Q  72 taacatatatattttttatttaagtgggggtgggtattagagtaaattttttcg---gagacccatagcttttggaggcccaacttatttgagcacctta 168  Q
    ||||||||||||||||||||||| ||||||||||||||||| | |  |||||||   ||||||| |||| ||||||||||| || |  ||||||| |||     
T  26151903 taacatatatattttttatttaaatgggggtgggtattagattta--tttttcgttagagacccgtagcatttggaggcccgacctggttgagcatcttg 26152000  T
Q  169 cactccctcaa 179  Q
    ||| |||||||    
T  26152001 cacaccctcaa 26152011  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 18676466 - 18676517
Alignment:
Q  72 taacatatatattttttatttaagtg-ggggtgggtattagagtaaattttt 122  Q
    |||||||||||||||||||||||||| ||||||||||||||| | |||||||    
T  18676466 taacatatatattttttatttaagtgaggggtgggtattagatttaattttt 18676517  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 21747319 - 21747382
Alignment:
Q  20 atgtccagataagagaactaaagtctacaaaaaactcaaacgtgtaaagaagtaacatatatat 83  Q
    |||| ||||||  |||||||||||||| ||||| |||||||||||||| |||||| ||||||||    
T  21747319 atgttcagatagaagaactaaagtctagaaaaacctcaaacgtgtaaaaaagtaatatatatat 21747382  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 110
Target Start/End: Original strand, 31273318 - 31273357
Alignment:
Q  71 gtaacatatatattttttatttaagtgggggtgggtatta 110  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  31273318 gtaacatatatattttttatttgagtgggggtgggtatta 31273357  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 36481315 - 36481264
Alignment:
Q  72 taacatatatattttttatttaagtg-ggggtgggtattagagtaaattttt 122  Q
    |||||||||||||||||||||||||| ||||||||||||||| | |||||||    
T  36481315 taacatatatattttttatttaagtggggggtgggtattagatttaattttt 36481264  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 6530568 - 6530518
Alignment:
Q  72 taacatatatattttttatttaagtgggggtgggtattagagtaaattttt 122  Q
    |||| |||||||||||||||||||||||||||| ||||||| | |||||||    
T  6530568 taacgtatatattttttatttaagtgggggtggatattagatttaattttt 6530518  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 19367574 - 19367684
Alignment:
Q  72 taacatatatattttttatttaagtggggg-tgggtattagagtaaatttt-ttcggagacccatagcttttggaggcccaacttatttgagcaccttac 169  Q
    ||||||||||||||||||||||| |||||| | ||||||||| | ||||||  |  ||||||| |||| ||||||||||| || |  ||||||||||| |    
T  19367574 taacatatatattttttatttaaatgggggataggtattagatttaattttcgttagagacccgtagcatttggaggcccgacctggttgagcaccttgc 19367673  T
Q  170 actccctcaaa 180  Q
    || ||||||||    
T  19367674 acaccctcaaa 19367684  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 13020331 - 13020292
Alignment:
Q  72 taacatatatatttttt-atttaagtgggggtgggtatta 110  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  13020331 taacatatatatttttttatttaagtgggggtgggtatta 13020292  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 12269335 - 12269285
Alignment:
Q  72 taacatatatattttttatttaagtgggggtgggtattagagtaaattttt 122  Q
    ||||||||||||||||||||||||  ||||||| ||||||| | |||||||    
T  12269335 taacatatatattttttatttaagctggggtggatattagatttaattttt 12269285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 9029531 - 9029471
Alignment:
Q  65 aaagaagtaacatatatatt-ttttatttaagtgggg-gtgggtattagagtaaatttttt 123  Q
    |||||| ||||||||||||| |||||||||||||||| |||| ||||||| | ||||||||    
T  9029531 aaagaaataacatatatatttttttatttaagtggggtgtggatattagacttaatttttt 9029471  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 21747899 - 21747951
Alignment:
Q  127 agacccatagcttttggaggcccaacttatttgagcaccttacactccctcaa 179  Q
    |||||||||||||||||| ||||  |||  ||||||||||| |||||||||||    
T  21747899 agacccatagcttttggaagcccggcttgattgagcaccttgcactccctcaa 21747951  T

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Target: scaffold0035 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 22919 - 22970
Alignment:
Q  72 taacatatatattttttatttaagtgg-gggtgggtattagagtaaattttt 122  Q
    ||||||||||||||||||||||||||| |||||| ||||||| | |||||||    
T  22919 taacatatatattttttatttaagtggagggtggatattagatttaattttt 22970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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