View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_70 (Length: 234)
Name: NF1952_low_70
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 44109226 - 44109004
Alignment:
| Q |
1 |
aaaatggtttggcaaaacatttagtatctgtggtgtaatggtgggtgagtaagagatttcatatgcacttgaaattgtatttgtgtactttttgtatatt |
100 |
Q |
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| T |
44109226 |
aaaatggtttggcaaaacatttagtatctgtggtgtaatggtgggtgagtaagagatttcatatgcacttgaaattgtatttgtgtactttttgtatatt |
44109127 |
T |
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| Q |
101 |
cagtcatgacatttaagtgttaattatcattgata-----gcgagccacaatcgatgagaatgcttgctatttgattgttctcctgtagtatgtcatgcc |
195 |
Q |
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| T |
44109126 |
cagtcatgacatttaagtgttaattatcattgatagcgaagcgagccacaatcgatgagaatgcttgcta-ttgattattctccagtagtatgtcatgct |
44109028 |
T |
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| Q |
196 |
gagccaagtttctacattcatttt |
219 |
Q |
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|||||||||||||||||||||||| |
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| T |
44109027 |
gagccaagtttctacattcatttt |
44109004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 2 - 217
Target Start/End: Complemental strand, 44146746 - 44146531
Alignment:
| Q |
2 |
aaatggtttggcaaaacatttagtatctgtggtgtaatggtgggtgagtaagagatttcatatgcacttgaaattgtatttgtgtactttttgtatattc |
101 |
Q |
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||||| ||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
44146746 |
aaatgctttggcaaaacatttagtacctgtggtgtagtggcgggtgagtaagagatttcatatgcacttgaaattgtatttctgtgctttttgtatattc |
44146647 |
T |
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| Q |
102 |
agtcatgacatttaagtgttaattatcattgatagcgagccacaatcgatgagaatgcttgctatttgattgttctcctgtagtatgtcatgccgagcca |
201 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||| ||| || |
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| T |
44146646 |
agtcatgacatttaagtgttaattatcgttgatgctgagccacaatcaatgagaatgcttgctatttgattattcccctgtagtatttcatgctgagtca |
44146547 |
T |
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| Q |
202 |
agtttctacattcatt |
217 |
Q |
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||||| ||||||||| |
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| T |
44146546 |
ggtttcaacattcatt |
44146531 |
T |
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Back To:
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