View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_72 (Length: 224)
Name: NF1952_low_72
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 35444274 - 35444466
Alignment:
| Q |
16 |
aatatattccaaacttatgtgtgatatcaatatgtttacatgtgtctgtatcatatcaattttaagcttgttggaacaccaatctcttgattttgcactt |
115 |
Q |
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| T |
35444274 |
aatatattccaaacttatgtgtgatatcaatatgtttacatgtgtctgtatcatatcaattttaagcttgttggaacaccaatctcttgattttgcactt |
35444373 |
T |
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| Q |
116 |
ctatgattagacgttgtgctgtgattatgtatcatataaaggcttgtccatgtaacatgaaataagagatacattgattggaatggtatgatt |
208 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35444374 |
ctatgattagacgttgtggtgtgattatgtatcatataaaggcttgtccatgtaacatgaaataagagatacattgattggaatggtatgatt |
35444466 |
T |
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