View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_73 (Length: 221)
Name: NF1952_low_73
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_73 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 29240389 - 29240205
Alignment:
| Q |
16 |
tatactctgatttgtgttgttgatacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttacataactcgaactctcagacat |
115 |
Q |
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| T |
29240389 |
tatactctgatttgtattgttgatacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttacataactcgaactctcagacat |
29240290 |
T |
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| Q |
116 |
aatgcgaaagattattttccacaacttacctatattctgcttcagttggtagcatatcaatatatcatcctcaagctcctgaatgaattgttt |
208 |
Q |
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| T |
29240289 |
agtgcaaaagattattttccacaacttacctatgttctgcttcagttggtagcat--------atcatcctcaagctcctgaatgaattgttt |
29240205 |
T |
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Target: chr8; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 16827925 - 16827741
Alignment:
| Q |
16 |
tatactctgatttgtgttgttgatacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttacataactcgaactctcagacat |
115 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16827925 |
tatactctgatttgtattcttgatacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttacataactcaaactctcagacat |
16827826 |
T |
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| Q |
116 |
aatgcgaaagattattttccacaacttacctatattctgcttcagttggtagcatatcaatatatcatcctcaagctcctgaatgaattgttt |
208 |
Q |
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| T |
16827825 |
aatgcaaaagattattttccacaacttacctacgttctgcttcagttggtag--------tatatcatcctccagctcctgaatgaattgttt |
16827741 |
T |
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