View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1952_low_9 (Length: 573)
Name: NF1952_low_9
Description: NF1952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1952_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 14 - 557
Target Start/End: Complemental strand, 29335626 - 29335083
Alignment:
| Q |
14 |
agaagaatatgaatctgatgttagtagccatgttgcttccactatatccacccaccaaattgaaacctctccaggttcctatagtaacagcctttccaat |
113 |
Q |
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| T |
29335626 |
agaagaatatgaatctgatgttagtagccatgttgcttccactatatccacccaccaaattgaaacctctacaggttcctatagtaacagcctttccaat |
29335527 |
T |
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| Q |
114 |
tcagattccatctcactggccttaacactcaatttcaacaacaatgacttggttgctcgagattcaacaggaatctcattctcaagcaccagcgagagca |
213 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29335526 |
tcagattccatctcactggacttaacactcaatttcaacaacaatgacttggttgttcgagattcaacaggaatctcattctcaagcaccagtgagagca |
29335427 |
T |
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| Q |
214 |
gcaatgaacttaccatccaaagagttttctcttgcaattactgtcggcgcaaattttacagctctcaggcacttggtggtcatcaaaatgcgcacaagag |
313 |
Q |
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| T |
29335426 |
gcaatgaacttaccatccaaagagttttctcttgcaattactgtcggcgcaaattttacagctctcaggcacttggtggtcatcaaaatgcacacaagag |
29335327 |
T |
|
| Q |
314 |
agtaagaacattagcaaagcgcgctatgcgaattggactattcactgagaggtatgcatgtcttgcatctctgcctctcaatggttctttcagggcatta |
413 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29335326 |
agaaagaacattagcaaagcgagctatgcgaattggactattcactgagaggtatgcatgtcttgcatctctgcctctcaatggttctttcagggcatta |
29335227 |
T |
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| Q |
414 |
ggtataaagacacactcttcactacaccatggtttttcgccgccaacaataaggcctagtcctgagataaaaagcaatgtaagattcaaacaaggatcta |
513 |
Q |
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| T |
29335226 |
ggtataaagacacactcttcactacaccatggtttttcgccgccaacaataaggcctagtcctgagataaaaagcaatgtaagattcaaacaaggatcta |
29335127 |
T |
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| Q |
514 |
tcggtcatccgatattcttggaggacgatgagacagaactgatg |
557 |
Q |
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| T |
29335126 |
tcggtcatccgatattcttggaggacgatgagacagaactgatg |
29335083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 33032647 - 33032549
Alignment:
| Q |
233 |
aagagttttctcttgcaattactgtcggcgcaaattttacagctctcaggcacttggtggtcatcaaaatgcgcacaagagagtaagaacattagcaaa |
331 |
Q |
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|||||||||||| ||||||||||||| | | || |||| ||| ||||| || |||||||| || |||||||| || || |||| ||||||||||||||| |
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| T |
33032647 |
aagagttttctcatgcaattactgtcagagaaagtttttcagttctcaagctcttggtggacaccaaaatgcacataaaagagaaagaacattagcaaa |
33032549 |
T |
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