View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_105 (Length: 313)
Name: NF19530_high_105
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_105 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 10 - 298
Target Start/End: Complemental strand, 38874772 - 38874476
Alignment:
| Q |
10 |
aacaatatcgtctggtcatttgttagcaagtcccaaatccttttaatttatgaagattataacaactcaacagggttaggagtacttaacaaaatttatt |
109 |
Q |
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| T |
38874772 |
aacaatatcttctggtcatttgttagcaagtcccaaatccttttaatttatgaagattataacaactcaacagggttaggagtacttaacaaaatttatt |
38874673 |
T |
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| Q |
110 |
tagtatgccctacttattttcctataatgtttggctcaactctatacttcacaaatggcattgaaaactcgcactctaactgtcacaatttccacaagtc |
209 |
Q |
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| T |
38874672 |
tagtatgccctacttattttcctataatgtttggctcaactctatacttcacaaatggcattgaaaactcgcactctaactgtcacaatttccacaagtc |
38874573 |
T |
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| Q |
210 |
ttt--------gggnnnnnnnngttactaaaccaaaaaggagacaatctgtaaatgtactctagattttaaagagattagtcggtagcagatatgtt |
298 |
Q |
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| T |
38874572 |
ttttgtatcaagcgatttttttgttactaaaccaaaaaggagacaatctgtaaatgtactctagattttaaagagattagtcggtagcagatatgtt |
38874476 |
T |
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