View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_106 (Length: 312)
Name: NF19530_high_106
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_106 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 294
Target Start/End: Complemental strand, 17136168 - 17135886
Alignment:
| Q |
11 |
gcactagacctcagtggcagttaagtaaatgagaaatgcta--aacatagaaagagaattactcacgaatgcattgcgacataatgtgaacggctgttca |
108 |
Q |
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| T |
17136168 |
gcactagacctgagtggtaggtaagtaaatgagaaattctatgaacatagcaagagaattactcacgaatgcattgcgacataatgtgattggctgttca |
17136069 |
T |
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| Q |
109 |
ataccactgccgagcatgttttccattatttccagaacattgtgcacactcaactcataacaatatctttcgtgaaaattcacgagagtacaattcgcga |
208 |
Q |
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| T |
17136068 |
ataccactgccgagcatgttttccattatttccggaacattgtgcacacttaactcataataatatccttcgtgaaaattcacaagtgcacaattcgcga |
17135969 |
T |
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| Q |
209 |
tgtatagcatcgctttaagtaaatacttgtaagttgtatactcatgtatatctagttttgaattacctccgaaatgaattataagc |
294 |
Q |
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| T |
17135968 |
tgtatagcatcgctctaagtaa--acttgtaagttgtatactcatttttatctacttttg-tctacttccgaaatgaattataagc |
17135886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 294
Target Start/End: Original strand, 17347648 - 17347930
Alignment:
| Q |
11 |
gcactagacctcagtggcagttaagtaaatgagaaatgcta--aacatagaaagagaattactcacgaatgcattgcgacataatgtgaacggctgttca |
108 |
Q |
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||||||||||| ||||| || |||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17347648 |
gcactagacctgagtggtaggtaagtaaatgagaaattctatgaacatagcaagagaattactcacgaatgcattgcgacataatgtgattggctgttca |
17347747 |
T |
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| Q |
109 |
ataccactgccgagcatgttttccattatttccagaacattgtgcacactcaactcataacaatatctttcgtgaaaattcacgagagtacaattcgcga |
208 |
Q |
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| T |
17347748 |
ataccactgccgagcatgttttccattatttccggaacattgtgcacacttaactcataataatatccttcgtgaaaattcacaagtgcacaattcgcga |
17347847 |
T |
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| Q |
209 |
tgtatagcatcgctttaagtaaatacttgtaagttgtatactcatgtatatctagttttgaattacctccgaaatgaattataagc |
294 |
Q |
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| T |
17347848 |
tgtatagcatcgctctaagtaa--acttgtaagttgtatactcatttttatctacttttg-tctacttccgaaatgaattataagc |
17347930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 41 - 221
Target Start/End: Original strand, 7230366 - 7230546
Alignment:
| Q |
41 |
gagaaatgctaaacatagaaagagaattactcacgaatgcattgcgacataatgtgaacggctgttcaataccactgccgagcatgttttccattatttc |
140 |
Q |
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| T |
7230366 |
gagaaatgctaaacataacgatagaattactcatgaatgcattgcgacataaagtgattggctgtttgataccactaccgagcatgttttctactatttc |
7230465 |
T |
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| Q |
141 |
cagaacattgtgcacactcaactcataacaatatctttcgtgaaaattcacgagagtacaattcgcgatgtatagcatcgc |
221 |
Q |
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| T |
7230466 |
cagaacataatgcacagtcaactcataataacatccttcatgaaaattcatgagcttacaattcgcgatgtataacatcgc |
7230546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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