View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19530_high_114 (Length: 299)

Name: NF19530_high_114
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19530_high_114
NF19530_high_114
[»] chr6 (6 HSPs)
chr6 (11-236)||(17732246-17732469)
chr6 (11-236)||(30709965-30710188)
chr6 (11-236)||(6008868-6009088)
chr6 (11-214)||(15347897-15348098)
chr6 (197-236)||(17732681-17732720)
chr6 (199-236)||(6009295-6009332)
[»] scaffold0102 (2 HSPs)
scaffold0102 (11-236)||(32824-33047)
scaffold0102 (197-236)||(32583-32622)
[»] chr8 (3 HSPs)
chr8 (11-236)||(14791142-14791362)
chr8 (11-236)||(20111722-20111939)
chr8 (197-236)||(20112140-20112179)
[»] chr4 (8 HSPs)
chr4 (11-236)||(27455392-27455615)
chr4 (30-236)||(49681488-49681691)
chr4 (200-236)||(21224481-21224517)
chr4 (197-236)||(27455149-27455188)
chr4 (203-236)||(21225014-21225047)
chr4 (203-236)||(21226405-21226438)
chr4 (199-236)||(49681900-49681937)
chr4 (202-236)||(21226032-21226066)
[»] chr3 (7 HSPs)
chr3 (11-236)||(47471165-47471385)
chr3 (11-236)||(50837688-50837912)
chr3 (11-236)||(54560498-54560718)
chr3 (197-236)||(47470925-47470964)
chr3 (197-234)||(50838122-50838159)
chr3 (200-236)||(35942660-35942696)
chr3 (200-236)||(35942333-35942369)
[»] chr7 (4 HSPs)
chr7 (18-236)||(36067794-36068010)
chr7 (197-236)||(3987104-3987143)
chr7 (204-236)||(30480579-30480611)
chr7 (203-236)||(36067525-36067558)
[»] chr5 (11 HSPs)
chr5 (11-236)||(5348188-5348408)
chr5 (11-236)||(36429754-36429974)
chr5 (11-158)||(26380164-26380321)
chr5 (203-236)||(29500239-29500272)
chr5 (200-236)||(7491478-7491514)
chr5 (200-236)||(29500584-29500620)
chr5 (200-236)||(31808509-31808545)
chr5 (204-236)||(36429513-36429545)
chr5 (198-231)||(933835-933868)
chr5 (207-236)||(36681722-36681751)
chr5 (200-236)||(14278564-14278600)
[»] chr2 (5 HSPs)
chr2 (11-236)||(4593084-4593304)
chr2 (11-236)||(10256169-10256392)
chr2 (200-236)||(33003114-33003150)
chr2 (197-236)||(10255900-10255939)
chr2 (197-236)||(33003594-33003633)
[»] chr1 (6 HSPs)
chr1 (11-236)||(47445212-47445435)
chr1 (197-236)||(36475511-36475550)
chr1 (200-236)||(27585864-27585900)
chr1 (200-236)||(36475842-36475878)
chr1 (199-236)||(47445642-47445679)
chr1 (200-236)||(27585529-27585565)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 17732469 - 17732246
Alignment:
Q  11 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatgaatttcctttttggagcagcgatgagatcatcaacaacaatga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||    
T  17732469 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacactga 17732370  T
Q  111 tcatcatcatcaatt-tctcttgatctttctgctacgacccttttggataacaacaatgagtaacaaacaagagaagctagtaacgagatgatgatgatg 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||   ||||||||||    
T  17732369 tcatcatcatcaattgtctcttgatctttctgctacgacccttttggataacaacaatgagcaacaaacaagagaagctagtaatga---gatgatgatg 17732273  T
Q  210 atgttgttaatggttgttgtttcttaa 236  Q
    |||||||||||||||||||||||||||    
T  17732272 atgttgttaatggttgttgtttcttaa 17732246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 30709965 - 30710188
Alignment:
Q  11 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatgaatttcctttttggagcagcgatgagatcatcaacaacaatga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||||||||||||    
T  30709965 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatggatttcttttttggagcagcgatgagattaccaacaacaatga 30710064  T
Q  111 tcatcatcatcaatt-tctcttgatctttctgctacgacccttttggataacaacaatgagtaacaaacaagagaagctagtaacgagatgatgatgatg 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||   ||||||||||    
T  30710065 tcatcatcatcaattgtctcttgatctttctgctacgacccttttggataacaacaatgagcaacaaacaagagaagctagtaatga---gatgatgatg 30710161  T
Q  210 atgttgttaatggttgttgtttcttaa 236  Q
    |||||||||||||||||||||||||||    
T  30710162 atgttgttaatggttgttgtttcttaa 30710188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 6009088 - 6008868
Alignment:
Q  11 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatgaatttcctttttggagcagcgatgagatcatcaacaacaatga 110  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  6009088 catcatcactcatgtctcctcttcagaatcaatcacttttgaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatga 6008989  T
Q  111 tcatcatcatcaatt-tctcttgatctttctgctacgacccttttggataacaacaatgagtaacaaacaagagaagctagtaacgagatgatgatgatg 209  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||      
T  6008988 tcatcatcatcaattgtctcttgatctttctgctacgacccttttggataacaataatgagcaacaaacaagagaagctagtaatgagatgatgatga-- 6008891  T
Q  210 atgttgttaatggttgttgtttcttaa 236  Q
        |||||||||||||||||||||||    
T  6008890 ----tgttaatggttgttgtttcttaa 6008868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 15347897 - 15348098
Alignment:
Q  11 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatgaatttcctttttggagcagcgatgagatcatcaacaacaatga 110  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||    
T  15347897 catcatcactcatgtctcctctttagaatcaatcactttttaaccctcattcaaatggatttccattttggagcagcgatgagattatcaacaacaatga 15347996  T
Q  111 tcatcatcatcaatttctcttgatctttctgctacgacccttttggataacaacaatgagtaacaaacaagagaagctagtaacgagatgatgatgatga 210  Q
    |||||||||  | | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||     
T  15347997 tcatcatca--attgtctcttgatctttctgctacgacccttttggataacaacaatgagcaacaaacaagagaagctagtaatgagatgatgatgatgt 15348094  T
Q  211 tgtt 214  Q
    ||||    
T  15348095 tgtt 15348098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 17732681 - 17732720
Alignment:
Q  197 gatgatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  17732681 gatgatgatgatgttgttgttaatggttgttgtttcttaa 17732720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 6009295 - 6009332
Alignment:
Q  199 tgatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  6009295 tgatgatgatgttgttgttaatggttgttgtttcttaa 6009332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 32824 - 33047
Alignment:
Q  11 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatgaatttcctttttggagcagcgatgagatcatcaacaacaatga 110  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| | ||||||||||||    
T  32824 catcatcactcatgtctccttttcagaatcaatcactttttaaccctcattcaaatggatttcctttttggagcagtgatgagattaccaacaacaatga 32923  T
Q  111 tcatcatcatcaatt-tctcttgatctttctgctacgacccttttggataacaacaatgagtaacaaacaagagaagctagtaacgagatgatgatgatg 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||   ||||||||||    
T  32924 tcatcatcatcaattgtctcttgatctttctgctacgacccttttggataacaacaatgagcaacaaacaagagaagctagtaatga---gatgatgatg 33020  T
Q  210 atgttgttaatggttgttgtttcttaa 236  Q
    |||||||||||||||||||||||||||    
T  33021 atgttgttaatggttgttgtttcttaa 33047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 32622 - 32583
Alignment:
Q  197 gatgatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  32622 gatgttgatgatgatgttgttaatggttgttgtttcttaa 32583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 14791142 - 14791362
Alignment:
Q  11 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatgaatttcctttttggagcagcgatgagatcatcaacaacaatga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  14791142 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatga 14791241  T
Q  111 tcatcatcatcaatttctcttgatctttctgctacgacccttttggataacaacaatgagtaacaaacaagagaagctagtaacgagatgatgatgatga 210  Q
    |||||||||  | | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||   |||||||||||    
T  14791242 tcatcatca--attgtctcttgatctttctgctacgacccttttggataacaacaatgagcaacaaacaagagaagctagtaatga---gatgatgatga 14791336  T
Q  211 tgttgttaatggttgttgtttcttaa 236  Q
    ||||||||||||||||||||||||||    
T  14791337 tgttgttaatggttgttgtttcttaa 14791362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 20111939 - 20111722
Alignment:
Q  11 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatgaatttcctttttggagcagcgatgagatcatcaacaacaatga 110  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| | ||||||||||||    
T  20111939 catcatcactcatgtctcatcttcaaaatcaatcactttttaaccctcattcaaatggattttctttttggagcagcgatgagattaccaacaacaatga 20111840  T
Q  111 tcatcatcatcaatttctcttgatctttctgctacgacccttttggataacaacaatgagtaacaaacaagagaagctagtaacgagatgatgatgatga 210  Q
    |||||||||  | | ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||      ||||||||    
T  20111839 tcatcatca--attgtctcttgatctttctgccacgacccttttggataacaacaatgagcaacaaacaagagaagctagtaatga------gatgatga 20111748  T
Q  211 tgttgttaatggttgttgtttcttaa 236  Q
    |||||||||| |||||||||||||||    
T  20111747 tgttgttaatcgttgttgtttcttaa 20111722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 20112140 - 20112179
Alignment:
Q  197 gatgatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  20112140 gatgttgatgatgatgttgttaatggttgttgtttcttaa 20112179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 27455392 - 27455615
Alignment:
Q  11 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatgaatttcctttttggagcagcgatgagatcatcaacaacaatga 110  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||    
T  27455392 catcatcactcatgtctcctcttcagaataaatcactttttaaccctcattcaaatggatttcctttttggagcagcgatgagattaccaacaacaatga 27455491  T
Q  111 tcatcatcatcaatt-tctcttgatctttctgctacgacccttttggataacaacaatgagtaacaaacaagagaagctagtaacgagatgatgatgatg 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||   ||||||||||    
T  27455492 tcatcatcatcaattgtctcttgatctttctgctacgacccttttggataacaacaatgagcaacaaacaagagaagttagtaatga---gatgatgatg 27455588  T
Q  210 atgttgttaatggttgttgtttcttaa 236  Q
    |||||||||||||||||||||||||||    
T  27455589 atgttgttaatggttgttgtttcttaa 27455615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 49681691 - 49681488
Alignment:
Q  30 tcttcagaatcaatcactttttaaccctcattcaaatgaatttcctttttggagcagcgatgagatcatcaacaacaatgatcatcatcatcaatt-tct 128  Q
    |||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  49681691 tctttagaatcaatcactttttaaccctcattcaaatgggtttcctttttggagcagcgatgagattatcaacaacaatgatcatcatcatcaattgtct 49681592  T
Q  129 cttgatctttctgctacgacccttttggataacaacaatgagtaacaaacaagagaagctagtaacgagatgatgatgatgatgttgttaatggttgttg 228  Q
    ||  ||||||  |||||||||||||||||||||||||||||  |||||||||||||||||||||| ||   |||||| ||||||||||||||||||||||    
T  49681591 ctatatcttt-agctacgacccttttggataacaacaatgatcaacaaacaagagaagctagtaatga---gatgataatgatgttgttaatggttgttg 49681496  T
Q  229 tttcttaa 236  Q
    ||||||||    
T  49681495 tttcttaa 49681488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 21224517 - 21224481
Alignment:
Q  200 gatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    |||||||||||||||||||||||||||||||||||||    
T  21224517 gatgatgatgatgttgttaatggttgttgtttcttaa 21224481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 27455188 - 27455149
Alignment:
Q  197 gatgatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  27455188 gatgttgatgatgatgttgttaatggttgttgtttcttaa 27455149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 21225014 - 21225047
Alignment:
Q  203 gatgatgatgttgttaatggttgttgtttcttaa 236  Q
    ||||||||||||||||||||||||||||||||||    
T  21225014 gatgatgatgttgttaatggttgttgtttcttaa 21225047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 21226405 - 21226438
Alignment:
Q  203 gatgatgatgttgttaatggttgttgtttcttaa 236  Q
    ||||||||||||||||||||||||||||||||||    
T  21226405 gatgatgatgttgttaatggttgttgtttcttaa 21226438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 49681900 - 49681937
Alignment:
Q  199 tgatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  49681900 tgatgatgatgttgttgttaatggttgttgtttcttaa 49681937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 21226066 - 21226032
Alignment:
Q  202 tgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    ||||||||||||| |||||||||||||||||||||    
T  21226066 tgatgatgatgtttttaatggttgttgtttcttaa 21226032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 176; Significance: 8e-95; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 47471165 - 47471385
Alignment:
Q  11 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatgaatttcctttttggagcagcgatgagatcatcaacaacaatga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||    
T  47471165 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatggatttcctttttggagcagcgatgagattaccaacaacaatga 47471264  T
Q  111 tcatcatcatcaatt-tctcttgatctttctgctacgacccttttggataacaacaatgagtaacaaacaagagaagctagtaacgagatgatgatgatg 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||      
T  47471265 tcatcatcatcaattgtctcttgatctttctgctacgacccttttggataacaacaatgagcaacaaacaagagaagctagtaatgagatgatgatga-- 47471362  T
Q  210 atgttgttaatggttgttgtttcttaa 236  Q
        |||||||||||||||||||||||    
T  47471363 ----tgttaatggttgttgtttcttaa 47471385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 50837912 - 50837688
Alignment:
Q  11 catcatcactcatgtctcctcttcagaatcaatcactttttaaccc-tcattcaaatgaatttcctttttggagcagcgatgagatcatcaacaacaatg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| || |||||||||| ||    
T  50837912 catcatcactcatgtctcctcttcagaatcaatcactttttaacccctcattcaaatggatttcctttttggagcagcgatgaaattatcaacaacactg 50837813  T
Q  110 atcatcatcatcaatt-tctcttgatctttctgctacgacccttttggataacaacaatgagtaacaaacaagagaagctagtaacgagatgatgatgat 208  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||       
T  50837812 atcatcatcatcaattgtctcttgatctttctgctacgacccttttggataacaacaatgagcaacaaacaagagaagctagtaatgagatgatgat--- 50837716  T
Q  209 gatgttgttaatggttgttgtttcttaa 236  Q
    ||||||||||||||||||||||||||||    
T  50837715 gatgttgttaatggttgttgtttcttaa 50837688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 54560498 - 54560718
Alignment:
Q  11 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatgaatttcctttttggagcagcgatgagatcatcaacaacaatga 110  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  54560498 catcatcactcatgtctcctcttcataatcaatcactttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatga 54560597  T
Q  111 tcatcatcatcaatttctcttgatctttctgctacgacccttttggataacaacaatgagtaacaaacaagagaagctagtaacgagatgatgatgatga 210  Q
    |||||||||  | | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||   |||||||||||    
T  54560598 tcatcatca--attgtctcttgatctttctgctacgacccttttggataacaacaatgagcaacaaacaagagaagcttgtaatga---gatgatgatga 54560692  T
Q  211 tgttgttaatggttgttgtttcttaa 236  Q
    ||||||||||||||||||||||||||    
T  54560693 tgttgttaatggttgttgtttcttaa 54560718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 47470964 - 47470925
Alignment:
Q  197 gatgatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  47470964 gatgttgatgatgatgttgttaatggttgttgtttcttaa 47470925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 50838122 - 50838159
Alignment:
Q  197 gatgatgatgatgatgttgttaatggttgttgtttctt 234  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  50838122 gatgatgatgatgttgttgttaatggttgttgtttctt 50838159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 35942660 - 35942696
Alignment:
Q  200 gatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    ||||||| |||||||||||||||||||||||||||||    
T  35942660 gatgatggtgatgttgttaatggttgttgtttcttaa 35942696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 35942369 - 35942333
Alignment:
Q  200 gatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  35942369 gatgatgatgatgttgttaatagttgttgcttcttaa 35942333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 36067794 - 36068010
Alignment:
Q  18 actcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatgaatttcctttttggagcagcgatgagatcatcaacaacaatgatcatcat 117  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36067794 actcatgtctcctcttcaaaatcaatcactttttaactctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatgatcatcat 36067893  T
Q  118 catcaatt-tctcttgatctttctgctacgacccttttggataacaacaatgagtaacaaacaagagaagctagtaacgagatgatgatgatgatgttgt 216  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||   |||||||||||||||||    
T  36067894 catcaattgtctcttgatctttctgctacgacccttttggataacaacaatgagcaacaaacaagagaagctagtaatga---gatgatgatgatgttgt 36067990  T
Q  217 taatggttgttgtttcttaa 236  Q
    ||||||||||||||||||||    
T  36067991 taatggttgttgtttcttaa 36068010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 3987104 - 3987143
Alignment:
Q  197 gatgatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  3987104 gatgatgatgatgatattgttaatggttgttgtttcttaa 3987143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 30480579 - 30480611
Alignment:
Q  204 atgatgatgttgttaatggttgttgtttcttaa 236  Q
    |||||||||||||||||||||||||||||||||    
T  30480579 atgatgatgttgttaatggttgttgtttcttaa 30480611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 36067558 - 36067525
Alignment:
Q  203 gatgatgatgttgttaatggttgttgtttcttaa 236  Q
    ||||||| ||||||||||||||||||||||||||    
T  36067558 gatgatgttgttgttaatggttgttgtttcttaa 36067525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 5348188 - 5348408
Alignment:
Q  11 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatgaatttcctttttggagcagcgatgagatcatcaacaacaatga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  5348188 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatga 5348287  T
Q  111 tcatcatcatcaatttctcttgatctttctgctacgacccttttggataacaacaatgagtaacaaacaagagaagctagtaacgagatgatgatgatga 210  Q
    |||||||||  | | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||   |||||||||||    
T  5348288 tcatcatca--attgtctcttgatctttctgctacgacccttttggataacaacaatgagcaacaaacaagagaagcttgtaatga---gatgatgatga 5348382  T
Q  211 tgttgttaatggttgttgtttcttaa 236  Q
    ||||||||||||||||||||||||||    
T  5348383 tgttgttaatggttgttgtttcttaa 5348408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 36429754 - 36429974
Alignment:
Q  11 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatgaatttcctttttggagcagcgatgagatcatcaacaacaatga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||||||||||||    
T  36429754 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatggatttcttttttggagcagcgatgagattaccaacaacaatga 36429853  T
Q  111 tcatcatcatcaatt-tctcttgatctttctgctacgacccttttggataacaacaatgagtaacaaacaagagaagctagtaacgagatgatgatgatg 209  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||   ||||||||| |||||||||||||||||||||| ||   ||||||||||    
T  36429854 tcatcatcatcaattgtctcttgatctttctgctacgacccttttggat---aacaatgagcaacaaacaagagaagctagtaatga---gatgatgatg 36429947  T
Q  210 atgttgttaatggttgttgtttcttaa 236  Q
    |||||||||||||||| ||||||||||    
T  36429948 atgttgttaatggttgctgtttcttaa 36429974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 158
Target Start/End: Original strand, 26380164 - 26380321
Alignment:
Q  11 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctca------ttcaaatgaatttcctttttggagcagcgatgagatcatcaacaa 104  Q
    |||||||||||||||||| |||||||||||||||| | |||||||||||      ||||||||  |||||||||||||||||||||||||| ||||| ||    
T  26380164 catcatcactcatgtctcatcttcagaatcaatcaatctttaaccctcaggctcattcaaatgggtttcctttttggagcagcgatgagattatcaataa 26380263  T
Q  105 caatg---atcatcatcatcaatt-tctcttgatctttctgctacgacccttttggat 158  Q
    |||||   |||||||||||||||| ||||||||||| ||||| | |||||||||||||    
T  26380264 caatgatcatcatcatcatcaattgtctcttgatctctctgcaatgacccttttggat 26380321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 29500272 - 29500239
Alignment:
Q  203 gatgatgatgttgttaatggttgttgtttcttaa 236  Q
    ||||||||||||||||||||||||||||||||||    
T  29500272 gatgatgatgttgttaatggttgttgtttcttaa 29500239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 7491514 - 7491478
Alignment:
Q  200 gatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    ||||||||||||||||||||||||| |||||||||||    
T  7491514 gatgatgatgatgttgttaatggttattgtttcttaa 7491478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 29500584 - 29500620
Alignment:
Q  200 gatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    |||||||||||||||||||||||||||| ||||||||    
T  29500584 gatgatgatgatgttgttaatggttgttatttcttaa 29500620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 31808545 - 31808509
Alignment:
Q  200 gatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    |||||||||||||||||||||||||||||| ||||||    
T  31808545 gatgatgatgatgttgttaatggttgttgtatcttaa 31808509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 36429545 - 36429513
Alignment:
Q  204 atgatgatgttgttaatggttgttgtttcttaa 236  Q
    |||||||||||||||||||||||||||||||||    
T  36429545 atgatgatgttgttaatggttgttgtttcttaa 36429513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 933868 - 933835
Alignment:
Q  198 atgatgatgatgatgttgttaatggttgttgttt 231  Q
    |||||||||||||||||||||||| |||||||||    
T  933868 atgatgatgatgatgttgttaatgattgttgttt 933835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 36681722 - 36681751
Alignment:
Q  207 atgatgttgttaatggttgttgtttcttaa 236  Q
    ||||||||||||||||||||||||||||||    
T  36681722 atgatgttgttaatggttgttgtttcttaa 36681751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 14278564 - 14278600
Alignment:
Q  200 gatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  14278564 gatgatgatgatgttgttgatgattgttgtttcttaa 14278600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 4593084 - 4593304
Alignment:
Q  11 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatgaatttcctttttggagcagcgatgagatcatcaacaacaatga 110  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4593084 catcatcactcatgtctcctcttcataatcaatcactttttaaccctcattcaaatgaatttcctttttggagcagcgatgagattatcaacaacaatga 4593183  T
Q  111 tcatcatcatcaatttctcttgatctttctgctacgacccttttggataacaacaatgagtaacaaacaagagaagctagtaacgagatgatgatgatga 210  Q
    |||||||||  | | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||   |||||||||||    
T  4593184 tcatcatca--attgtctcttgatctttctgctacgacccttttggataacaacaatgagcaacaaacaagagaagcttgtaatga---gatgatgatga 4593278  T
Q  211 tgttgttaatggttgttgtttcttaa 236  Q
    ||||||||||||||||||||||||||    
T  4593279 tgttgttaatggttgttgtttcttaa 4593304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 10256169 - 10256392
Alignment:
Q  11 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatgaatttcctttttggagcagcgatgagatcatcaacaacaatga 110  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||| | ||||||||||||    
T  10256169 catcatcactcatgtctcctcttgagaatcaatcactttctaaccctcattcaaatggatttccattttggagcagcgatgagattaccaacaacaatga 10256268  T
Q  111 tcatcatcatcaatt-tctcttgatctttctgctacgacccttttggataacaacaatgagtaacaaacaagagaagctagtaacgagatgatgatgatg 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||   ||||||||||    
T  10256269 tcatcatcatcaattgtctcttgatctttctgctacgacccttttggataacaacaatgagcaacaaacaagagaagctagtaatga---gatgatgatg 10256365  T
Q  210 atgttgttaatggttgttgtttcttaa 236  Q
    |||||||||||||||||||||||||||    
T  10256366 atgttgttaatggttgttgtttcttaa 10256392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 33003150 - 33003114
Alignment:
Q  200 gatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    |||||||||||||||||||||||||||||||||||||    
T  33003150 gatgatgatgatgttgttaatggttgttgtttcttaa 33003114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 10255939 - 10255900
Alignment:
Q  197 gatgatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  10255939 gatgttgatgatgatgttgttaatggttgttgtttcttaa 10255900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 33003594 - 33003633
Alignment:
Q  197 gatgatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    ||||||||||||||||||| ||||| ||||||||||||||    
T  33003594 gatgatgatgatgatgttgataatgattgttgtttcttaa 33003633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 47445435 - 47445212
Alignment:
Q  11 catcatcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatgaatttcctttttggagcagcgatgagatcatcaacaacaatga 110  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||    
T  47445435 catcaccactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatggatttcctttttggagcaacgatgagattaccaacaacaatga 47445336  T
Q  111 tcatcatcatcaatt-tctcttgatctttctgctacgacccttttggataacaacaatgagtaacaaacaagagaagctagtaacgagatgatgatgatg 209  Q
    |||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||   ||||||||||    
T  47445335 tcatcatcataaattgtctcttgatctttctgctacgacccttttgaataacaacaatgagcaacaaacaagagaagctagtaatga---gatgatgatg 47445239  T
Q  210 atgttgttaatggttgttgtttcttaa 236  Q
    |||||||||||||||||||||||||||    
T  47445238 atgttgttaatggttgttgtttcttaa 47445212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 36475550 - 36475511
Alignment:
Q  197 gatgatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36475550 gatgatgatgatgatgttgttaatggttgttgtttcttaa 36475511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 27585864 - 27585900
Alignment:
Q  200 gatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    |||||||||||||||||||||||||||||||||||||    
T  27585864 gatgatgatgatgttgttaatggttgttgtttcttaa 27585900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 36475842 - 36475878
Alignment:
Q  200 gatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    |||||||||||||||||||||||||||||||||||||    
T  36475842 gatgatgatgatgttgttaatggttgttgtttcttaa 36475878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 47445642 - 47445679
Alignment:
Q  199 tgatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  47445642 tgatgatgatgttgttgttaatggttgttgtttcttaa 47445679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 27585565 - 27585529
Alignment:
Q  200 gatgatgatgatgttgttaatggttgttgtttcttaa 236  Q
    ||||||||||||||||||||||||| |||||||||||    
T  27585565 gatgatgatgatgttgttaatggttattgtttcttaa 27585529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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