View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_115 (Length: 298)
Name: NF19530_high_115
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_115 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 44089093 - 44088910
Alignment:
| Q |
19 |
attttgtctatcttcactgaaaaatcttttgattctccattctttatctttttgttctacctcagagccattttgtactttagtagtcttcttcatccaa |
118 |
Q |
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| T |
44089093 |
attttgtctatcttcactgaaaaatcttttgattctccattctttatctttttgttctacctcagagccattttgtactttagtagtcttcttcatccaa |
44088994 |
T |
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| Q |
119 |
tcaaaagaaattggaaagaacatcttcaataggaaggtttcactgtccatgctttcaactcttaacattttaccatgtctattg |
202 |
Q |
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| T |
44088993 |
tcaaaagaaattggaaagaacatcttcaataggaaggtttcactgtccatgctttcaactcttaacattttaccatgtctattg |
44088910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 287
Target Start/End: Complemental strand, 44088860 - 44088825
Alignment:
| Q |
252 |
gttgaggttgttgaaatttactatacacaggttctg |
287 |
Q |
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| T |
44088860 |
gttgaggttgttgaaatttactatacactggttctg |
44088825 |
T |
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