View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_118 (Length: 296)
Name: NF19530_high_118
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_118 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 51983103 - 51983331
Alignment:
| Q |
16 |
atgcaaaccgtaactgccaataaattatgataataatatatggcactaaaattggtaatactaagtgcttgagtcggttcgagaaaatggggcatgccca |
115 |
Q |
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| T |
51983103 |
atgcaaatcgtaactgccaataaattatgataataatatatggcactaaaattggtaatactaagtgcttgagtcggttcgagaaaatggggcacgccca |
51983202 |
T |
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| Q |
116 |
caaaactgaatgactgaatttaaaaattatgtgcatacatcttcaacctcttgaaaggtcttctgacccgattgaaaacatagcagacccgattttaaca |
215 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||| |
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| T |
51983203 |
caaaactgaatgactgaatttaaaaattatgagcatacatcttcaacctcttgaaaggtcttttgacccgattgaaaacatagcagactcagttttaaca |
51983302 |
T |
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| Q |
216 |
aatttcgatttcataatcattttaacacc |
244 |
Q |
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| T |
51983303 |
aatttcgatttcataatcattttaacacc |
51983331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 36837884 - 36837983
Alignment:
| Q |
19 |
caaaccgtaactgccaataaattatgataataatatatggcactaaaattgg-taatactaagtgcttgagtcggttcgagaaaatggggcatgcccaca |
117 |
Q |
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||||||||||| |||||||||||||||| ||||| |||||| |||||||||| |||| || | |||||||||||||| |||||||||||||| |||||| |
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| T |
36837884 |
caaaccgtaacagccaataaattatgattataatgtatggcgctaaaattggttaatgctga-tgcttgagtcggttggagaaaatggggcacacccaca |
36837982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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