View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19530_high_12 (Length: 574)
Name: NF19530_high_12
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 10 - 567
Target Start/End: Original strand, 29095871 - 29096428
Alignment:
| Q |
10 |
gcagagaggagggcaacagctcagttgatgtatgatttgggcaagaaagcttacgggagaggctcgtacggacgtgccgttgagtttcttgaaggttcac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29095871 |
gcagagaggagggcaacagctcagttgatgtatgatttgggcaagaaagcttacgggagaggctcgtacggacgtgccgttgagtttcttgaaggtgcac |
29095970 |
T |
|
| Q |
110 |
tcaccatcataccaagatctacgttatttggtggtgaggttagtcgattctaaactaaataagaatctctacattttctttctttgatttattttcattt |
209 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29095971 |
tcaccatcataccaagacctacgttatttggtggtgaggttagtcgattctaaactaaataagaatctctacattttctttctttgatttattttcattt |
29096070 |
T |
|
| Q |
210 |
gtctttaattgattaaagagtaagtaaaaggagtctttttattnnnnnnnnttgtgaatttcagatacaaatatggctggctatggcttatgaggccaat |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29096071 |
gtctttaattgattaaagagtaagtaaaaggagtctttttattaaaaaaa-ttgtgaatttcagatacaaatatggctggctatggcttatgaggccaat |
29096169 |
T |
|
| Q |
310 |
aatcgccataaagattgcattgatctttacaagcaattagaaaagtcgcaccctagtattagcatcaaacgtcaagctgcagaacttcgttacattttgg |
409 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29096170 |
aatcgccataaagattgcattgctctttacaagcaattagaaaattcgcaccctagtattagcatcaaacgtcaagctgcagaacttcgttacattttgg |
29096269 |
T |
|
| Q |
410 |
aagcaccaaagctcaagataacgcaagaagagatggtgactatacccttgattggttccagttatgacaggtcatttgactcttcatgttactaattaag |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29096270 |
aagcaccaaagctcaagataacgcaagaagagatggtgactatacccttgattggttccagttatgacaggtcatttgactcttcatgttactaattaag |
29096369 |
T |
|
| Q |
510 |
attcattcaagtctatttgtttattacattcttgattttcctttggaat-tgatgatgt |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29096370 |
attcattcaagtctatttgtttattacattcttgattttcctttggaatatgatgatgt |
29096428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University