View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_121 (Length: 292)
Name: NF19530_high_121
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_121 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 1076175 - 1075921
Alignment:
| Q |
20 |
acttgttgagagaggtccttaattagattgtcataaattaagtatatacttgctaacatttttcaataatatataataatatgggcctacataggttagg |
119 |
Q |
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| T |
1076175 |
acttgttgagtgaggtccttaattagattgtcataaattaagtatatacttactaacatttttcaataatatataataatatgggcctacataggttagg |
1076076 |
T |
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| Q |
120 |
attaaaaaagtttaaatcataaaaattaagatggtatgtaagttgtaaccaaagctgtagctaggttagcaattctcttggagtcaatatctattattaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1076075 |
attaaaaaagtttaaatcataaaaattaagatggtatgtaagttgtaaccaaagctgtagctaggttagcaattctcttggactcaatatctattattaa |
1075976 |
T |
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| Q |
220 |
atgagtagtctttttgactgctaataggggagattagacccttttgctaaaccta |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1075975 |
atgagtagtctttttgactgctaataggggagattagacccttttgctaaaccta |
1075921 |
T |
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