View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_127 (Length: 286)
Name: NF19530_high_127
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_127 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 39280452 - 39280190
Alignment:
| Q |
19 |
tgtatgtgatcacattggcctcaaaacctttcttgaccatctcatctaagaattcaagagaagagaccagatgcccctttttgcaaagcccgtcgatcat |
118 |
Q |
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| T |
39280452 |
tgtatgtgatcacattgggctcaaaacctttcttgaccatctcatctaagaattcaagagcagagaccagatacccctttttgcaaagcccatcgatcat |
39280353 |
T |
|
| Q |
119 |
tatgttaaacgtgaaggcatcaggctcaaaaccggcaattaccatgtttttgtacaaaagatccttggcttcttcaaaccttccactaacaacataacca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39280352 |
tatgttaaacgtgaaggcatcaggctcaaaaccggcaattaccatgtttttgtacaaaagatccttggcttcttcaaaccttccactaacaacataacca |
39280253 |
T |
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| Q |
219 |
ttaatcaatgtattataaagcaccgtattagggttaggaattttgcttagcatggcctttgct |
281 |
Q |
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| T |
39280252 |
ttaatcaatgtattataaagcaccgtattagggttaggaattttgcttagcatggcccttgct |
39280190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 17349872 - 17350120
Alignment:
| Q |
19 |
tgtatgtgatcacattggcctcaaaacctttcttgaccatctcatctaagaattcaagagaagagaccagatgcccctttttgcaaagcccgtcgatcat |
118 |
Q |
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|||||||||||||||| | |||||||||||||| |||||||||| |||||||||||||| |||||||| || |||||| |||||||| || |||||||| |
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| T |
17349872 |
tgtatgtgatcacatttggctcaaaacctttctctaccatctcatttaagaattcaagagcagagaccaaataccccttcttgcaaagtccatcgatcat |
17349971 |
T |
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| Q |
119 |
tatgttaaacgtgaaggcatcaggctcaaaaccggcaattaccatgtttttgtacaaaagatccttggcttcttcaaaccttccactaacaacataacca |
218 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
17349972 |
tatgttaaacatgaaggcatcaggctcaaagccggcaattaccatgttttggtacagaagatccttggcttcttcaaaccttccactagcaacatatcca |
17350071 |
T |
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| Q |
219 |
ttaatcaatgtattataaagcaccgtattagggttaggaattttgctta |
267 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
17350072 |
ttaatcaatgtattataaagcacagtattagggttaggaatcttgctta |
17350120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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