View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19530_high_128 (Length: 284)

Name: NF19530_high_128
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19530_high_128
NF19530_high_128
[»] chr8 (2 HSPs)
chr8 (111-268)||(12640411-12640577)
chr8 (52-91)||(12640368-12640407)
[»] chr4 (2 HSPs)
chr4 (179-268)||(48963372-48963461)
chr4 (178-268)||(48966418-48966508)
[»] chr6 (2 HSPs)
chr6 (167-250)||(12482450-12482533)
chr6 (166-250)||(12589181-12589265)
[»] chr2 (1 HSPs)
chr2 (168-268)||(13441289-13441389)


Alignment Details
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 111 - 268
Target Start/End: Original strand, 12640411 - 12640577
Alignment:
Q  111 aaaagactaatcgagtattaaagaaatttgatctgcacttctttcccctcaaaa------aagaattgatcagcaatggaag---gtgttgaagtcgaac 201  Q
    ||||||||||| |||||||| ||||| |||||| ||| || |||||||||||||      || || ||||||||||||||||   |||||| ||| ||||    
T  12640411 aaaagactaattgagtattagagaaaattgatcagcaattatttcccctcaaaagaaaaaaaaaactgatcagcaatggaagatggtgttggagttgaac 12640510  T
Q  202 ggccattgaaacttcacatgcttccatttctatcacctggtcatatgattcctttgggtgacatagc 268  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  12640511 ggccattgaaacttctcatacttccatttctagcacctggtcatatgattcctttgggtgacatagc 12640577  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 12640368 - 12640407
Alignment:
Q  52 tcgtgcagacataattcaataataaatagtgagataaacc 91  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  12640368 tcgtgcggatataattcaataataaatagtgagataaacc 12640407  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 48963461 - 48963372
Alignment:
Q  179 aatggaaggtgttgaagtcgaacggccattgaaacttcacatgcttccatttctatcacctggtcatatgattcctttgggtgacatagc 268  Q
    |||||| || |||||||| ||||| ||||||||||||||| |  |||||| |||  ||||||||||||||||||||||||||||||||||    
T  48963461 aatggagggcgttgaagttgaacgaccattgaaacttcacttcattccatatcttgcacctggtcatatgattcctttgggtgacatagc 48963372  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 48966508 - 48966418
Alignment:
Q  178 caatggaaggtgttgaagtcgaacggccattgaaacttcacatgcttccatttctatcacctggtcatatgattcctttgggtgacatagc 268  Q
    ||||||||||||||||| |  |||| ||| ||||||||||| |  |||||| |||| |||| || |||||||| ||| || ||||||||||    
T  48966508 caatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagc 48966418  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 12482450 - 12482533
Alignment:
Q  167 gaattgatcagcaatggaaggtgttgaagtcgaacggccattgaaacttcacatgcttccatttctatcacctggtcatatgat 250  Q
    |||||||||  ||||||||||||||||||| ||||| ||||||||||||||| |  ||||||||| | ||||||| ||||||||    
T  12482450 gaattgatctacaatggaaggtgttgaagttgaacgaccattgaaacttcacttcattccatttccagcacctgggcatatgat 12482533  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 12589181 - 12589265
Alignment:
Q  166 agaattgatcagcaatggaaggtgttgaagtcgaacggccattgaaacttcacatgcttccatttctatcacctggtcatatgat 250  Q
    ||||||||| ||||||| |||| |||||| | ||||  ||||| ||||||||| |  |||||| |||||||||||| ||||||||    
T  12589181 agaattgataagcaatgaaaggcgttgaaattgaacaaccattaaaacttcacttcattccatatctatcacctgggcatatgat 12589265  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 268
Target Start/End: Complemental strand, 13441389 - 13441289
Alignment:
Q  168 aattgatcagcaatggaaggtgttgaagtcgaacggccattgaaacttcacatgcttccatttctatcacctggtcatatgattcctttgggtgacatag 267  Q
    |||| |||| ||||||||||||||||||| ||||| ||| ||||| ||||| |  |||||| |||| || |||| |||||||| ||| |  |||||||||    
T  13441389 aatttatcaacaatggaaggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacatag 13441290  T
Q  268 c 268  Q
    |    
T  13441289 c 13441289  T

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