View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_136 (Length: 273)
Name: NF19530_high_136
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_136 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 13393823 - 13394078
Alignment:
| Q |
1 |
caaccaatactattgggataaactttcaatccggtcattgtcgcttcaattcgttaaatnnnnnnnctaacaattagtagttacataccaccaagagggt |
100 |
Q |
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| T |
13393823 |
caaccaatactattgggataaactttcaatccggtccatgtcgcttcaattcgttaaataaaaaaactaacaattagtagttacataccaccaagagggt |
13393922 |
T |
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| Q |
101 |
aaggatgtgcatgaaattttcatgaagtttaatgtaatttggtggggttgatatgataggtgacatggatgaatacaaatggaaaagaaaagggaactaa |
200 |
Q |
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| T |
13393923 |
aaggatgtgcatgaaattttcatgaagtttaatgtaatttggtggggttgatatgataggtgacatggatgaatacaaatggaaaagaaaagggaactaa |
13394022 |
T |
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| Q |
201 |
atctgaatgtgtatacaatagtaatgggaaagtgcctttgttatgtgctgcttctg |
256 |
Q |
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| T |
13394023 |
atctgaatgtgtatacaatagtaatgggaaagtgcctttgttatgtgctgcttctg |
13394078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 253
Target Start/End: Original strand, 13397038 - 13397180
Alignment:
| Q |
114 |
aaattttcatgaagtttaatgtaatttggtggggttgatatgataggtgacatgg---atgaatacaaatggaaaagaaaagggaactaaatctgaatgt |
210 |
Q |
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| T |
13397038 |
aaattttcatgaagtttaatataatttggtgatgatgatataataggtgacatggattatgaataaagatggaaaagataagggagataaatatgaatgt |
13397137 |
T |
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| Q |
211 |
gtatacaatagtaatgggaaagtgcctttgttatgtgctgctt |
253 |
Q |
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| T |
13397138 |
gcttacaatggtaacggtaaagtacctttgctatgttctgctt |
13397180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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