View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19530_high_139 (Length: 268)

Name: NF19530_high_139
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19530_high_139
NF19530_high_139
[»] chr6 (5 HSPs)
chr6 (83-252)||(14593076-14593245)
chr6 (83-252)||(13308326-13308493)
chr6 (1-55)||(13308255-13308309)
chr6 (50-89)||(14595485-14595524)
chr6 (1-37)||(14595448-14595484)
[»] chr5 (2 HSPs)
chr5 (103-219)||(6837779-6837895)
chr5 (136-200)||(34915885-34915949)
[»] chr3 (1 HSPs)
chr3 (103-219)||(22598549-22598665)
[»] chr7 (3 HSPs)
chr7 (103-252)||(22347989-22348138)
chr7 (83-250)||(21281790-21281957)
chr7 (136-200)||(17859863-17859927)
[»] chr1 (1 HSPs)
chr1 (103-217)||(16000914-16001028)
[»] chr4 (1 HSPs)
chr4 (136-200)||(4968394-4968458)
[»] chr8 (1 HSPs)
chr8 (103-216)||(306589-306702)


Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 83 - 252
Target Start/End: Complemental strand, 14593245 - 14593076
Alignment:
Q  83 aaaatgaagtatgatattcagttttggcagcaatggttagagattgtttggccacaccggtgtcaactgttgcttctgaaagcgcatttagcactggagg 182  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14593245 aaaatgaagtatgatatccagttttggcagcaatggttacagattgtttggccacatcggtgtcaactgttgcttctgaaagcgcatttagcactggagg 14593146  T
Q  183 aagagttttagacacatacaggagctccttgagtccgacaatggttgcagctttgatatgttgtcaaaat 252  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| || ||||||||||||||||||||||    
T  14593145 aagagttttagacacatataggagttccttgagtccgacaatggctgaagctttgatatgttgtcaaaat 14593076  T

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Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 83 - 252
Target Start/End: Original strand, 13308326 - 13308493
Alignment:
Q  83 aaaatgaagtatgatattcagttttggcagcaatggttagagattgtttggccacaccggtgtcaactgttgcttctgaaagcgcatttagcactggagg 182  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||| ||||||||||||||||    
T  13308326 aaaatgaagtctgatatccagttttggcagcaatggttagagattgtttggcggtg--ggtgtcaactgttgcttctgaaagcacatttagcactggagg 13308423  T
Q  183 aagagttttagacacatacaggagctccttgagtccgacaatggttgcagctttgatatgttgtcaaaat 252  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| || ||||||||||||||||||||||    
T  13308424 aagagttttagacacatataggagctccttgaatccgacaatggctgaagctttgatatgttgtcaaaat 13308493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13308255 - 13308309
Alignment:
Q  1 ccttgagaggtacttaagcgacccacctgaaaacgatgatgagaagtttaacatt 55  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13308255 ccttgagaagtacttaagcgacccacctgaaaacgatgatgagaagtttaacatt 13308309  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 14595524 - 14595485
Alignment:
Q  50 aacatttgaaaacaaaggaaaccattgttcaacaaaatga 89  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14595524 aacatttgaaaacaaaggaaaccattgttcaacaaaatga 14595485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14595484 - 14595448
Alignment:
Q  1 ccttgagaggtacttaagcgacccacctgaaaacgat 37  Q
    |||||||||||||||||| ||||||||||||||||||    
T  14595484 ccttgagaggtacttaagtgacccacctgaaaacgat 14595448  T

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Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 103 - 219
Target Start/End: Complemental strand, 6837895 - 6837779
Alignment:
Q  103 gttttggcagcaatggttagagattgtttggccacaccggtgtcaactgttgcttctgaaagcgcatttagcactggaggaagagttttagacacataca 202  Q
    ||||||||| ||||||||||||||   ||||||||||| || ||| | |||||||| || |||||||||||||| ||||||||  ||||||||||||| |    
T  6837895 gttttggcaacaatggttagagatgtgttggccacaccagtatcatcagttgcttcggagagcgcatttagcaccggaggaaggattttagacacatata 6837796  T
Q  203 ggagctccttgagtccg 219  Q
    ||||||| |||||||||    
T  6837795 ggagctcattgagtccg 6837779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 34915885 - 34915949
Alignment:
Q  136 acaccggtgtcaactgttgcttctgaaagcgcatttagcactggaggaagagttttagacacata 200  Q
    ||||| || |||||||| ||||||||||| || |||||||||||||||||||||||||| |||||    
T  34915885 acaccagtttcaactgtggcttctgaaagtgcctttagcactggaggaagagttttagatacata 34915949  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 22598549 - 22598665
Alignment:
Q  103 gttttggcagcaatggttagagattgtttggccacaccggtgtcaactgttgcttctgaaagcgcatttagcactggaggaagagttttagacacataca 202  Q
    ||||||||| ||||||||||||||   ||||||||||| || ||| | |||||||| || |||||||||||||| ||||||||  ||||||||||||| |    
T  22598549 gttttggcaacaatggttagagatgtgttggccacaccagtatcatcagttgcttcggagagcgcatttagcaccggaggaaggattttagacacatata 22598648  T
Q  203 ggagctccttgagtccg 219  Q
    ||||||| |||||||||    
T  22598649 ggagctcattgagtccg 22598665  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 103 - 252
Target Start/End: Original strand, 22347989 - 22348138
Alignment:
Q  103 gttttggcagcaatggttagagattgtttggccacaccggtgtcaactgttgcttctgaa-agcgcatttagcactggaggaagagttttagacacatac 201  Q
    ||||||||| ||||||||||||||   ||||||||||| || ||| | ||||||| |||| ||||||||||||||||| |||||  |||||||||||||     
T  22347989 gttttggcaacaatggttagagatgtgttggccacaccagtatcatcagttgctt-tgaagagcgcatttagcactgggggaaggattttagacacatat 22348087  T
Q  202 aggagctccttgagtccgacaatggttgcagctttgatatgttgtcaaaat 252  Q
    || ||||| |||||||||  |||||  | ||||||||| |||  |||||||    
T  22348088 agaagctcattgagtccggaaatggcggaagctttgatttgtactcaaaat 22348138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 250
Target Start/End: Complemental strand, 21281957 - 21281790
Alignment:
Q  83 aaaatgaagtatgatattcagttttggcagcaatggttagagattgtttggccacaccggtgtcaactgttgcttctgaaagcgcatttagcactggagg 182  Q
    |||||||||| || |||||||||||||||  ||||||||||||||||||| ||||||  | ||||||  |||||  | |||||||||||||||  ||| |    
T  21281957 aaaatgaagtttgttattcagttttggcaataatggttagagattgtttgaccacacatgcgtcaacacttgctagtaaaagcgcatttagcataggaag 21281858  T
Q  183 aagagttttagacacatacaggagctccttgagtccgacaatggttgcagctttgatatgttgtcaaa 250  Q
    ||| |||||| |||| || | ||| |||| ||||   |  || | || ||||||||||||||||||||    
T  21281857 aagggttttaaacacttatatgagttcctagagtttaaatattgatgaagctttgatatgttgtcaaa 21281790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 17859927 - 17859863
Alignment:
Q  136 acaccggtgtcaactgttgcttctgaaagcgcatttagcactggaggaagagttttagacacata 200  Q
    ||||| || |||||||| ||||||||||| || |||||||||||||||||||||||||| |||||    
T  17859927 acaccagtttcaactgtggcttctgaaagtgcctttagcactggaggaagagttttagatacata 17859863  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 217
Target Start/End: Original strand, 16000914 - 16001028
Alignment:
Q  103 gttttggcagcaatggttagagattgtttggccacaccggtgtcaactgttgcttctgaaagcgcatttagcactggaggaagagttttagacacataca 202  Q
    ||||||||| ||||||||||||||   ||||||||||| || ||| | |||||||| || ||||||||||||||  | |||||  ||||||||||||| |    
T  16000914 gttttggcaacaatggttagagatgtgttggccacacctgtatcatcagttgcttcggagagcgcatttagcacccggggaaggattttagacacatata 16001013  T
Q  203 ggagctccttgagtc 217  Q
    | ||||| |||||||    
T  16001014 gaagctcattgagtc 16001028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 4968458 - 4968394
Alignment:
Q  136 acaccggtgtcaactgttgcttctgaaagcgcatttagcactggaggaagagttttagacacata 200  Q
    ||||| || |||||||| ||||||||||| || |||||||||||||||||||||||||| |||||    
T  4968458 acaccagtttcaactgtggcttctgaaagtgcctttagcactggaggaagagttttagatacata 4968394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 306702 - 306589
Alignment:
Q  103 gttttggcagcaatggttagagattgtttggccacaccggtgtcaactgttgcttctgaaagcgcatttagcactggaggaagagttttagacacataca 202  Q
    ||||||||| ||||||||||||||   ||||||||||| || ||| | ||| |||| || |||||||||||||| || |||||  |||||||| |||| |    
T  306702 gttttggcaacaatggttagagatgtcttggccacaccagtatcatcagtttcttcggagagcgcatttagcaccgggggaaggattttagacccatata 306603  T
Q  203 ggagctccttgagt 216  Q
    ||||| | ||||||    
T  306602 ggagcccattgagt 306589  T

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