View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19530_high_151 (Length: 252)
Name: NF19530_high_151
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_151 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 10094461 - 10094220
Alignment:
| Q |
1 |
tacacctggcttgtcctcccatgattttgctcctgataagcatagaagtatgtacatgaatgattcttactcgagtgagagttacgaaaagtacttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10094461 |
tacacctggcttgtcctcccatgattttgctcctgataagcatagaagcatgtacatgaatgattcttactcgagtgagagttacgaaaagtacttcctt |
10094362 |
T |
|
| Q |
101 |
gattcacctacagaggaactgatagaaccgtctagttctgggatatcaggaaattctgttcatgctgatggtgattcttcgtaccagctcagagctaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10094361 |
gattcacctacagaggaactgatagaaccgtctagttctgggatatcaggaaattctgttcatgctgatggtgattcttcctaccagctcagagctaatt |
10094262 |
T |
|
| Q |
201 |
caggaggttctatggtcactgataacccgtttgatacctatg |
242 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
10094261 |
caggaggttctatgatcactgataacccgtttgatacttatg |
10094220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 138
Target Start/End: Original strand, 40767430 - 40767535
Alignment:
| Q |
33 |
ctgataagcatagaagtatgtacatgaatgattcttactcgagtgagagttacgaaaagtacttccttgattcacctacagaggaactgatagaaccgtc |
132 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||| |||||||||| ||||||||||| ||||| |||| ||| || |||||| |||||||||||||| || |
|
|
| T |
40767430 |
ctgataagcatagaagcatgtatatgacagatgcttactcgagcgagagttacgagaagtatttccatgactcgaatacagaagaactgatagaaccatc |
40767529 |
T |
|
| Q |
133 |
tagttc |
138 |
Q |
| |
|
|||||| |
|
|
| T |
40767530 |
tagttc |
40767535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University