View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_153 (Length: 250)
Name: NF19530_high_153
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_153 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 16809435 - 16809671
Alignment:
| Q |
1 |
cttttactacttttttccctcattttattattgcatttaatgtacaagtcatcattaataaattatttttaaaattattctacatgcacaactttttatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16809435 |
cttttactacttttttccctcattttattattgcatttaatgtacaagtcatcattaataaattatttttaaaattattctacatgcacaacttttgatt |
16809534 |
T |
|
| Q |
101 |
tatttatgataaatacaagaagccaatactccataactgattgaaatttaatcacaaagaataagaccaaaaccccattaataatttaatttttcatatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16809535 |
tatttatgataaatacaagaagccaatactccataactgattgaaatttaatcacaaagaataagaccaaaaccccattaataatttaatttttcatatt |
16809634 |
T |
|
| Q |
201 |
aaattcacctccttcataaaacccaccactttcccct |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
16809635 |
aaattcacctccttcataaaacccaccactttcccct |
16809671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 16848716 - 16848952
Alignment:
| Q |
1 |
cttttactacttttttccctcattttattattgcatttaatgtacaagtcatcattaataaattatttttaaaattattctacatgcacaactttttatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16848716 |
cttttactacttttttccctcattttattattgcatttaatgtacaagtcatcattaataaattatttttaaaattattctacatgcacaacttttgatt |
16848815 |
T |
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| Q |
101 |
tatttatgataaatacaagaagccaatactccataactgattgaaatttaatcacaaagaataagaccaaaaccccattaataatttaatttttcatatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16848816 |
tatttatgataaatacaagaagccaatactccataactgattgaaatttaatcacaaagaataagaccaaaaccccattaataatttaatttttcatatt |
16848915 |
T |
|
| Q |
201 |
aaattcacctccttcataaaacccaccactttcccct |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
16848916 |
aaattcacctccttcataaaacccaccactttcccct |
16848952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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