View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_16 (Length: 556)
Name: NF19530_high_16
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Original strand, 39952009 - 39952550
Alignment:
| Q |
1 |
tttatccatgggcactctgattttgttgttaaaatatgtattagatttaaattatgttgagcaaatatctcttgattatgtttgttgatttttctccctg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952009 |
tttatccatgggcactctgattttgttgttaaaatatgtattagatttaaattatgttgagcaaatatctcttgattatgtttgttgatttttctccctg |
39952108 |
T |
|
| Q |
101 |
taacaccaaaggatttagctttagatttgattgcaattacttggttatatataacttggctgagagtaatttcgctgaagcaattcaaatcatctcattc |
200 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952109 |
taac--caagggatttagctttagatttgattgcaattacttggttatatataacttggctgagagtaatttcgctgaagcaattcaaatcatctcattc |
39952206 |
T |
|
| Q |
201 |
aacaattatgaaaagtgattaatttgatgacatttatgaggtgatagatgaatcagaaaacatgctatgggagaatattttgctgatggtcatacaattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39952207 |
aacaattatgaaaagtgattaatttgatgacatttatgaggtgatagatgaatcagaaaacatgctatgggagaatattttgctgatggtcatataattt |
39952306 |
T |
|
| Q |
301 |
catccactaagaaagcannnnnnnnnnnnnnnnnnnnnnnnnccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgttt |
400 |
Q |
| |
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||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39952307 |
catccactaagaaagcatttttcgttttattttgctctttttccattgaaggatcaagatgtttcactataacgggtcattgtacttcaagcagatgttt |
39952406 |
T |
|
| Q |
401 |
gacaagttataccaggtcagtagtatctcgaactcttgctgattattgtttttgtatatcctttccgcagatgtcaatggatatggtgtgagtagattga |
500 |
Q |
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| T |
39952407 |
gacaagttataccaggtcagtagtatctcgaactcttgctgattattgtttttgtatatcctttccgcagatgtcaatggatatggtgtgagtagattga |
39952506 |
T |
|
| Q |
501 |
actctggttttgttggtgctctaatttcgctaatcacttcattt |
544 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
39952507 |
actctggttttgttggtgctttaatttcgctaatcacttcattt |
39952550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 126 - 460
Target Start/End: Original strand, 30339468 - 30339802
Alignment:
| Q |
126 |
tttgattgcaattacttggttatatataacttggctgagagtaatttcgctgaagcaattcaaatcatctcattcaacaattatgaaaagtgattaattt |
225 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30339468 |
tttgattgcaatcacttggttatatataacttggctgagagtaatttctctcaagcaattcaaatcatttcattcaacaattatgaaaagtgattaattt |
30339567 |
T |
|
| Q |
226 |
gatgacatttatgaggtgatagatgaatcagaaaacatgctatgggagaatattttgctgatggtcatacaatttcatccactaagaaagcannnnnnnn |
325 |
Q |
| |
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| T |
30339568 |
gatgacatttatgaggtgatagatgaatcagaaaacatgctatgggagaatattttgctgatggtcatacaatttcatccactaagaaagcatttttcat |
30339667 |
T |
|
| Q |
326 |
nnnnnnnnnnnnnnnnnccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagta |
425 |
Q |
| |
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|||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30339668 |
ttgattttgttctttttccattgaaggatcaagttttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataacaggtcagtagta |
30339767 |
T |
|
| Q |
426 |
tctcgaactcttgctgattattgtttttgtatatc |
460 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
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| T |
30339768 |
tctcaaactcttgctgattattgtttttgtatatc |
30339802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 10116916 - 10116848
Alignment:
| Q |
134 |
caattacttggttatatataacttggctgagagtaatttcgctgaagcaattcaaatcatctcattcaa |
202 |
Q |
| |
|
|||||||||||||||| ||||| |||||| | ||||||| || ||||||||||||||| |||||||| |
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| T |
10116916 |
caattacttggttataaataacagggctgacaataatttctctcaagcaattcaaatcaattcattcaa |
10116848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 30339363 - 30339394
Alignment:
| Q |
1 |
tttatccatgggcactctgattttgttgttaa |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
30339363 |
tttatccatgggcactctgattttgttgttaa |
30339394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 27 - 296
Target Start/End: Complemental strand, 34230526 - 34230259
Alignment:
| Q |
27 |
tgttaaaatatgtattagatttaaattatgttgagcaaatatctcttgattatgtttgttgatttttctccctgtaacaccaaaggatttagctttagat |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| ||| |||||| | ||||||| |
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| T |
34230526 |
tgttaaaatatgtattagatttaaattatgttgagtaaatatctcttgattatgtttgttggcttttatccctgtaac--caagggatttggttttagat |
34230429 |
T |
|
| Q |
127 |
ttgattgcaattacttggttatatataacttggctgagagtaatttcgctgaagcaattcaaatcatctcattcaacaattatgaaaagtgattaatttg |
226 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| ||||||||| | |||| |
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| T |
34230428 |
ttgattgctatcccttggttatatataacttggctgagagtaatttctctcaagcaattcaaatcatctcattgaacaattattaaaagtgataagtttg |
34230329 |
T |
|
| Q |
227 |
atgacatttatgaggtgatagatgaatcagaaaacatgctatgggagaatattttgctgatggtcataca |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
34230328 |
atgacatttatgaggtgatagatgaatcagaaaacatactataggagaatattttgctgatggtcataca |
34230259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 343 - 464
Target Start/End: Complemental strand, 34230240 - 34230119
Alignment:
| Q |
343 |
ccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
442 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34230240 |
ccattgaaggatcaagatttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
34230141 |
T |
|
| Q |
443 |
ttattgtttttgtatatccttt |
464 |
Q |
| |
|
|||||||||||||| ||||||| |
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| T |
34230140 |
ttattgtttttgtacatccttt |
34230119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 28547073 - 28546919
Alignment:
| Q |
51 |
attatgttgagcaaatatctct-tgattatgtttgttgatttttctccctgtaacaccaaaggatttagctttagatttgattgcaattacttggttata |
149 |
Q |
| |
|
||||||||||| |||||||||| | |||| |||||||| ||||| ||||| || ||| |||||||||| |||||||||||||||| ||||||||||| |
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|
| T |
28547073 |
attatgttgagtaaatatctctatcattaggtttgttggtttttatccctacaat--caagggatttagctgtagatttgattgcaatcacttggttata |
28546976 |
T |
|
| Q |
150 |
tataacttggctgagagtaatttcgctgaagcaattcaaatcatctcattcaacaat |
206 |
Q |
| |
|
||||| ||||||||||||||| || |||||||||||||||||||||| |||||| |
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|
| T |
28546975 |
aataacaaggctgagagtaatttttctcaagcaattcaaatcatctcatttaacaat |
28546919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 343 - 476
Target Start/End: Original strand, 37221990 - 37222123
Alignment:
| Q |
343 |
ccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
442 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37221990 |
ccattgaaagatcaagatttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
37222089 |
T |
|
| Q |
443 |
ttattgtttttgtatatcctttccgcagatgtca |
476 |
Q |
| |
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| |||||||||||||||||||| ||||||||||| |
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|
| T |
37222090 |
taattgtttttgtatatccttttcgcagatgtca |
37222123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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