View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_161 (Length: 246)
Name: NF19530_high_161
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_161 |
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| [»] scaffold0277 (2 HSPs) |
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| [»] scaffold0419 (1 HSPs) |
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Alignment Details
Target: scaffold0277 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 8613 - 8400
Alignment:
| Q |
15 |
gaagaacaagagactaagaagtttggtaaatcttgtgatcgttggaggattcttcgatccttcaaaatccaaagatggcgaagaaacagaagaaatcaag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8613 |
gaagaacaagagactaagaagtttggtaaatcttgtgatcgttggaggattcttcgatccttcaaaatccaaagatagcgaagaaacagaagaaatcaag |
8514 |
T |
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| Q |
115 |
aaaatgcattacttaattgatgaaagaatacaaactgcaaggtcagttcagatggattgcggctcaaactgatcgatatcgcaatggagagctttaccga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8513 |
aaaatgcattacttaattgatgaaagaatacaaactgcaaggtcagttcagatggattgcggctcaaactgatcgatatcgcaatggagagctttaccga |
8414 |
T |
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| Q |
215 |
tgtatcgcggatac |
228 |
Q |
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|||||||||||||| |
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| T |
8413 |
tgtatcgcggatac |
8400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 17363 - 17150
Alignment:
| Q |
15 |
gaagaacaagagactaagaagtttggtaaatcttgtgatcgttggaggattcttcgatccttcaaaatccaaagatggcgaagaaacagaagaaatcaag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17363 |
gaagaacaagagactaagaagtttggtaaatcttgtgatcgttggaggattcttcgatccttcaaaatccaaagatagcgaagaaacagaagaaatcaag |
17264 |
T |
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| Q |
115 |
aaaatgcattacttaattgatgaaagaatacaaactgcaaggtcagttcagatggattgcggctcaaactgatcgatatcgcaatggagagctttaccga |
214 |
Q |
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| T |
17263 |
aaaatgcattacttaattgatgaaagaatacaaactgcaaggtaagttcagatggattgcggctcaaactgatcaatatcgcaatggagagctttaccga |
17164 |
T |
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| Q |
215 |
tgtatcgcggatac |
228 |
Q |
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|||||||||||||| |
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| T |
17163 |
tgtatcgcggatac |
17150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 12729 - 12942
Alignment:
| Q |
15 |
gaagaacaagagactaagaagtttggtaaatcttgtgatcgttggaggattcttcgatccttcaaaatccaaagatggcgaagaaacagaagaaatcaag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
12729 |
gaagaacaagagactaagaagtttggtaaatcttgtgatcgttggaggattcttcgatccttcaaaatccaaagatagcaaagaaacagaagaaatcaag |
12828 |
T |
|
| Q |
115 |
aaaatgcattacttaattgatgaaagaatacaaactgcaaggtcagttcagatggattgcggctcaaactgatcgatatcgcaatggagagctttaccga |
214 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12829 |
aaaatgcattacttaattgatgaacgaatacaaactgcaaggtcagttcagatggattgcggctcaaactgatcgatatcgcaatggagagctttaccga |
12928 |
T |
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| Q |
215 |
tgtatcgcggatac |
228 |
Q |
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|||||||||||||| |
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| T |
12929 |
tgtatcgcggatac |
12942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 28777681 - 28777890
Alignment:
| Q |
15 |
gaagaacaagagactaagaagtttggtaaatcttgtgatcgttggaggattcttcgatccttcaaaatccaaagatggcgaagaaacagaagaaatcaag |
114 |
Q |
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|||||||||| ||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28777681 |
gaagaacaagcgactaagaagtttagtaaatcttgtaattgttggaggattcttcgatccttcaaaatccaaagatagcgaagaaacagaagaaatcaag |
28777780 |
T |
|
| Q |
115 |
aaaatgcattacttaattgatgaaagaatacaaactgcaaggtcagttcagatggattgcggctcaaactgatcgatatcgcaatggagagctttaccga |
214 |
Q |
| |
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|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||| |
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| T |
28777781 |
aagatgcattac----ttgatgaaagaatacaaactgcaaggtcagttcagatggattgctgctcaaactgattgatatctcaatggagagctttaccga |
28777876 |
T |
|
| Q |
215 |
tgtatcgcggatac |
228 |
Q |
| |
|
|||||||||||||| |
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| T |
28777877 |
tgtatcgcggatac |
28777890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 28799385 - 28799594
Alignment:
| Q |
15 |
gaagaacaagagactaagaagtttggtaaatcttgtgatcgttggaggattcttcgatccttcaaaatccaaagatggcgaagaaacagaagaaatcaag |
114 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||| |
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| T |
28799385 |
gaagaacaagcgactaagaagtttagtaaatcttgtaattgttggaggattcttcgatccgtcaaaatccaaagatagagaagaaacagaagaaatcaag |
28799484 |
T |
|
| Q |
115 |
aaaatgcattacttaattgatgaaagaatacaaactgcaaggtcagttcagatggattgcggctcaaactgatcgatatcgcaatggagagctttaccga |
214 |
Q |
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|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||| |
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| T |
28799485 |
aagatgcattac----ttgatgaaagaatacaaactgcaaggtcagttcagatggattgcggcgcaaactgacagatatcgcaacggagagctttaccga |
28799580 |
T |
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| Q |
215 |
tgtatcgcggatac |
228 |
Q |
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|||||||||||||| |
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| T |
28799581 |
tgtatcgcggatac |
28799594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 132 - 228
Target Start/End: Original strand, 28783809 - 28783905
Alignment:
| Q |
132 |
tgatgaaagaatacaaactgcaaggtcagttcagatggattgcggctcaaactgatcgatatcgcaatggagagctttaccgatgtatcgcggatac |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
28783809 |
tgatgaaagaatacaaactgcaaggtcagttcagatggattgcagcgcaaactgacagatatcgcaacggagagctttaccgatgtatcgcggatac |
28783905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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