View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19530_high_162 (Length: 246)
Name: NF19530_high_162
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_162 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 35548912 - 35548690
Alignment:
| Q |
6 |
taacaaattgttttcttgtccataaagctagcaatcccgaaacaaaactctctcctcatgatctataaatagggttacatccataagtaaaaagtgcaca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35548912 |
taacaaattgttttcttgtccataaagctaacaatcccgaaacaaaactctctcctcatgatctataaatagggttacatccataagtaaaaagtgcaca |
35548813 |
T |
|
| Q |
106 |
gaagaaactaaggagataggagtaaaaaagttaagctttcgaagtaaaagaaataaccatggcttcttcaatctctacacagtcaggtatgttttatgag |
205 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35548812 |
gaagaaactaagaagataggagtaaaaaagttaagctttcgaaataaaagaaataaccatggcttcttcaatctctacacagtcaggtatgttttatgag |
35548713 |
T |
|
| Q |
206 |
aattagaattttatgaaaaagtt |
228 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
35548712 |
aattagaattttatgaaaaagtt |
35548690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University