View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19530_high_165 (Length: 240)

Name: NF19530_high_165
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19530_high_165
NF19530_high_165
[»] chr2 (15 HSPs)
chr2 (86-240)||(28213869-28214023)
chr2 (60-240)||(28222261-28222436)
chr2 (1-240)||(32310813-32311069)
chr2 (1-240)||(32799254-32799510)
chr2 (135-240)||(32792737-32792842)
chr2 (135-240)||(32306683-32306788)
chr2 (135-240)||(32786354-32786459)
chr2 (1-84)||(28222444-28222527)
chr2 (135-240)||(32563903-32564007)
chr2 (168-240)||(32813598-32813670)
chr2 (1-63)||(28213747-28213809)
chr2 (1-56)||(32563781-32563836)
chr2 (1-123)||(32813438-32813573)
chr2 (1-50)||(32785122-32785171)
chr2 (1-56)||(32792635-32792690)


Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 86 - 240
Target Start/End: Original strand, 28213869 - 28214023
Alignment:
Q  86 acatttaacacagcaccatcaaaatttataaattctgtcaacatttaacacatggccaaaactaccatcaaatgtgtgtgagaaacttacataggaagag 185  Q
    ||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  28213869 acatttaacacagtaccatcaaaatctataaattctgtaaacatttaacacatggccaaaactaccctcaaatgtgtgtgagaaacttacataagaagag 28213968  T
Q  186 aacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaagagcttac 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28213969 aacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaagagcttac 28214023  T

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Target: chr2; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 60 - 240
Target Start/End: Complemental strand, 28222436 - 28222261
Alignment:
Q  60 attgcagccttgcaacactagactaaacatttaacacagcaccatcaaaatttataaattctgtcaacatttaacacatggccaaaactaccatcaaatg 159  Q
    ||||||||||||||| |||||||     ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||    
T  28222436 attgcagccttgcaatactagac-----atttaacacagtaccatcaaaatctataaattctgtaaacatttaacacatggctaaaactaccatcaaatg 28222342  T
Q  160 tgtgtgagaaacttacataggaagagaacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaagagcttac 240  Q
    ||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28222341 tgtgtaagaaacttacataggaagagaaccaatttgctaagccagaatgaaatatatgaaccaactcgcttaagagcttac 28222261  T

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Target: chr2; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 32311069 - 32310813
Alignment:
Q  1 atatacttcaataccttggaatccaagttttattaaggcataacaaaacactttgaatt----------attgcagccttgcaacactagactaaacatt 90  Q
    |||||||||||||||||||||||||||||||| |||  ||||||| |||||||||| ||          |||||||||||||||||||| | ||||||||    
T  32311069 atatacttcaataccttggaatccaagttttaataaaacataacagaacactttgacttgtttatatttattgcagccttgcaacactaaagtaaacatt 32310970  T
Q  91 t---aacacagcaccatcaaaatttataaattctgtcaaca--tttaac---acatggccaaaactaccatcaaatgtgtgtgagaaacttacataggaa 182  Q
    |   ||| |||  ||||||||||  ||||||||||| ||||  | | ||   ||||||||||||||||| |||||||||| |||||||||||||||||||    
T  32310969 tttcaacccagtgccatcaaaatcaataaattctgt-aacagctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaa 32310871  T
Q  183 gagaacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaagagcttac 240  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  32310870 gagaacaaatttgctaaactagaatgaaatatatgaaccaactcacttaagagcttac 32310813  T

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Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 32799254 - 32799510
Alignment:
Q  1 atatacttcaataccttggaatccaagttttattaaggcataacaaaacactttgaatt----------attgcagccttgcaacactagactaaacat- 89  Q
    ||||||||||||||||||||||| |||||||| |||||||||| | |||||||||| ||          |||||||||||||||||||||| |||||||     
T  32799254 atatacttcaataccttggaatctaagttttaataaggcataaaagaacactttgatttgttgatatttattgcagccttgcaacactagagtaaacata 32799353  T
Q  90 --ttaacacagcaccatcaaaatttataaattctgtca-acatttaac---acatggccaaaactaccatcaaatgtgtgtgagaaacttacataggaag 183  Q
      |||| ||||  |||  |||||||||||||||| | | |  | | ||   ||||||||||||||||| | |||||||| ||||||||||||||||||||    
T  32799354 ttttaaaacagtgccacaaaaatttataaattctataatagctgtcactttacatggccaaaactaccctaaaatgtgtatgagaaacttacataggaag 32799453  T
Q  184 agaacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaagagcttac 240  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  32799454 agaacaaatttgctaaactagaatgaaatatatgaaccaactcacttaagagcttac 32799510  T

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Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 32792737 - 32792842
Alignment:
Q  135 acatggccaaaactaccatcaaatgtgtgtgagaaacttacataggaagagaacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaaga 234  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||    
T  32792737 acatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagagaacaaatttgataaactagaatgaaatatatgaaccaactcacttaaga 32792836  T
Q  235 gcttac 240  Q
    ||||||    
T  32792837 gcttac 32792842  T

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Target: chr2; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 32306788 - 32306683
Alignment:
Q  135 acatggccaaaactaccatcaaatgtgtgtgagaaacttacataggaagagaacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaaga 234  Q
    ||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  32306788 acatggccaaaactaccctaaaatgtgtatgagaaacttacataggaagagaacaaatttgctaaactagaatgaaatatatgaaccaactcacttaaga 32306689  T
Q  235 gcttac 240  Q
    | ||||    
T  32306688 gtttac 32306683  T

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Target: chr2; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 32786354 - 32786459
Alignment:
Q  135 acatggccaaaactaccatcaaatgtgtgtgagaaacttacataggaagagaacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaaga 234  Q
    ||||||||||||| ||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  32786354 acatggccaaaaccaccctaaaatatgtgtgagaaacttacataggaagagaacaaatttgctaaaccagaatgaaatatatgaaccgactcacttaaga 32786453  T
Q  235 gcttac 240  Q
    ||||||    
T  32786454 gcttac 32786459  T

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Target: chr2; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 28222527 - 28222444
Alignment:
Q  1 atatacttcaataccttggaatccaagttttattaaggcataacaaaacactttgaattattgcagccttgcaacactagacta 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  28222527 atatacttcaataccttggaatccaagttttattaaggcataacagaacactttgatttattgcagccttgcaacactagacta 28222444  T

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Target: chr2; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 32563903 - 32564007
Alignment:
Q  135 acatggccaaaactaccatcaaatgtgtgtgagaaacttacataggaagagaacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaaga 234  Q
    ||||||||||||||||| |||||||||| |||||||||||||| |||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  32563903 acatggccaaaactaccctcaaatgtgtatgagaaacttacattggaaaa-aacaaattttctaaaccagaatgaaatatatgaaccaactcacttaaga 32564001  T
Q  235 gcttac 240  Q
    ||||||    
T  32564002 gcttac 32564007  T

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Target: chr2; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 32813598 - 32813670
Alignment:
Q  168 aaacttacataggaagagaacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaagagcttac 240  Q
    |||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||    
T  32813598 aaacttgcataggaagagaacaaattttctaaaccagaatgaattatatgaaccaactcacttaagagcttac 32813670  T

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Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 28213747 - 28213809
Alignment:
Q  1 atatacttcaataccttggaatccaagttttattaaggcataacaaaacactttgaattattg 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  28213747 atatacttcaataccttggaatccaagttttattaaggcataacagaacactttgatttattg 28213809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 32563781 - 32563836
Alignment:
Q  1 atatacttcaataccttggaatccaagttttattaaggcataacaaaacactttga 56  Q
    |||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||    
T  32563781 atatacttcaataccttggaatccaagttttaataaagcataacagaacactttga 32563836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 32813438 - 32813573
Alignment:
Q  1 atatacttcaataccttggaatccaagttttattaaggcataacaaaacactttg----------aattattgcagccttgcaacactagactaaaca-- 88  Q
    |||||||||||||||||||||||||||||||| |||  ||||||| |||||||||          | |||||||||||||||||||||| | ||||||      
T  32813438 atatacttcaataccttggaatccaagttttaataaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaacagt 32813537  T
Q  89 -tttaacacagcaccatcaaaatttataaattctgt 123  Q
     ||||||||||  ||||||||||  |||||||||||    
T  32813538 ttttaacacagttccatcaaaatcaataaattctgt 32813573  T

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Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 32785122 - 32785171
Alignment:
Q  1 atatacttcaataccttggaatccaagttttattaaggcataacaaaaca 50  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  32785122 atatacttcaataccttggaatccaagttttaataaggcataacagaaca 32785171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 32792635 - 32792690
Alignment:
Q  1 atatacttcaataccttggaatccaagttttattaaggcataacaaaacactttga 56  Q
    |||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||    
T  32792635 atatacttcaataccttggaatccaagttttaataaagcataacagaacaatttga 32792690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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