View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_170 (Length: 238)
Name: NF19530_high_170
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_170 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4617750 - 4617969
Alignment:
| Q |
1 |
ttatgttgtgactccttgcattgtgactcgagtgtatctctgacagcaagagctacaaaaagaaaggaaacagtcgatgaacaaaaattcatcacagatt |
100 |
Q |
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| T |
4617750 |
ttatgttgtgactccttgcattgtgactcgagcgtatctctgacagcaagagctacaaaaagaaaggaaacagtcgatgaacaaaaattcatcacagatt |
4617849 |
T |
|
| Q |
101 |
aagcgctgccagatattcaagattccaagaaagtgtcttcaaagatataccatttttcccaaacagtatttctcaaaacaaaacaaaagcttacccaaca |
200 |
Q |
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| T |
4617850 |
aagcgctgccagatattcaagattccaagaaagtgtcttcaaagatatacca-ttttcccaaacagtatttctcaaaacaaaacaaaagcttacccaaca |
4617948 |
T |
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| Q |
201 |
ctccattatagcccaaattaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
4617949 |
ctccattatagcccaaattaa |
4617969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 45985779 - 45985678
Alignment:
| Q |
35 |
tatctctgacagcaagagctacaaaaagaaaggaaacagtcgatgaacaaaaattcatcacagattaagcgctgccagatattcaagattccaagaaagt |
134 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
45985779 |
tatctctgccagcaagagctacaaaaagaaaggaaacagtcgatgaacaaaaattagatacagattaagcgctgccagatattcaatattccaaaaaagt |
45985680 |
T |
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| Q |
135 |
gt |
136 |
Q |
| |
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|| |
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| T |
45985679 |
gt |
45985678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 43038372 - 43038516
Alignment:
| Q |
11 |
actccttgcattgtgactcgagtgtatctctgacagcaagagctacaaaaagaaaggaaacagtcgatgaacaaaaattcatcacagattaagcgctgcc |
110 |
Q |
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||||| ||||| ||||||| || |||||||||| |||| |||||||||||| || ||| ||||| ||||||||||||| | |||||||||| ||||| |
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| T |
43038372 |
actccctgcatagtgactcaagcttatctctgacggcaaaagctacaaaaaggaatgaagcagtcaatgaacaaaaattagttacagattaagggctgca |
43038471 |
T |
|
| Q |
111 |
agatattcaagattccaagaaagtgtcttcaaagatataccattt |
155 |
Q |
| |
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| |||| |||||| ||| ||||| | | ||| ||||||||||| |
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| T |
43038472 |
atgtatttaagatttcaaaaaagtttatctaaaaatataccattt |
43038516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 173
Target Start/End: Complemental strand, 39242887 - 39242754
Alignment:
| Q |
38 |
ctctgacagcaagagctacaaaaagaaaggaaacagtcgatgaacaaaaattcatcacagattaagcgctgccagatattcaagattccaagaaagtgtc |
137 |
Q |
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||||||||||||||||||||||| || ||||||||||| |||||| |||||| | ||||||||||| ||||||||||||||| ||||||| |||| || |
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| T |
39242887 |
ctctgacagcaagagctacaaaaggagaggaaacagtcaatgaac-aaaattagttacagattaagcactgccagatattcaacattccaaaaaaggatc |
39242789 |
T |
|
| Q |
138 |
ttcaaagatataccatttttcccaaacagtatttct |
173 |
Q |
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| T |
39242788 |
tctgaagatatacca-ttttcccaaacagtatttct |
39242754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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