View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_172 (Length: 237)
Name: NF19530_high_172
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_172 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 16809431 - 16809230
Alignment:
| Q |
1 |
gcgttagaattctgactcctttgaggaaaccaaaacttcctttaatgacaataaaatgtttgacttttcca-tttttaattcgagacatgttcgattcag |
99 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16809431 |
gcgttagaattctgactcctttgaggaaaccaaaacttcctttaatgacaataaaatgtttgacttttccactttttaattcgagacatgttcgattcag |
16809332 |
T |
|
| Q |
100 |
tcaccagaacttatctttctcaccactttcctatcatattcatattattactcccttcattctaaattaaataacataatttgattatgtgtatattcaa |
199 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16809331 |
tcaccagaacttatctttctcatcactttcctatcatattcatattattactccctccattctaaattaaataacataatttgattatgtgtatattcaa |
16809232 |
T |
|
| Q |
200 |
at |
201 |
Q |
| |
|
|| |
|
|
| T |
16809231 |
at |
16809230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 16848712 - 16848511
Alignment:
| Q |
1 |
gcgttagaattctgactcctttgaggaaaccaaaacttcctttaatgacaataaaatgtttgacttttcca-tttttaattcgagacatgttcgattcag |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16848712 |
gcgttagaattctgactcctttgaggaaaccaaaacttcctttaatgacaataaaatgtttgacttttccactttttaattcgagacatgttcgattcag |
16848613 |
T |
|
| Q |
100 |
tcaccagaacttatctttctcaccactttcctatcatattcatattattactcccttcattctaaattaaataacataatttgattatgtgtatattcaa |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16848612 |
tcaccagaacttatctttctcatcactttcctatcatattcatattattactccctccattctaaattaaataacataatttgattatgtgtatattcaa |
16848513 |
T |
|
| Q |
200 |
at |
201 |
Q |
| |
|
|| |
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|
| T |
16848512 |
at |
16848511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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