View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_186 (Length: 227)
Name: NF19530_high_186
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_186 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 3913695 - 3913521
Alignment:
| Q |
17 |
cagacaaagtatatattaggattacatacaagacttggaaggaggtgcagttgcctatgttttcaggaatatttcctgtcaagctattgtttttcacatc |
116 |
Q |
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| T |
3913695 |
cagacaaagtatatagtaggattacatacaagacttggaaggaggtgcagttgcctatgttttcaggaatatttcctgtcaagctattgtttttcacatc |
3913596 |
T |
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| Q |
117 |
actacagaaataaaaggaagaaattaatcatatcatcatatccttcaaaaaatgcacattttgaggacttggaat |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3913595 |
actacagaaataaaaggaagaaattaatcatatcatcatatccttcaaaaaatgcacattttgaggacttggaat |
3913521 |
T |
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