View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_19 (Length: 520)
Name: NF19530_high_19
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 40051999 - 40051485
Alignment:
| Q |
1 |
ctgttcctgaagtagtggaacccgatcatgttatggaggaatctgatagattctttaagagttcattctttaggaaaattgcacatgttcaggaacgtag |
100 |
Q |
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| T |
40051999 |
ctgttcctgaagtagtggaacccgatcatgttatggaggaatctgatagattctttaagagttcattctttaggaaaattgcacatgttcaggaacgtag |
40051900 |
T |
|
| Q |
101 |
ttatcctgatcataaccaagtttctagtccgattcacagagatgcttttgcttatcaacctcgtgctgagactcttaagtctgttggtgttgatccatct |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40051899 |
ttatcctgatcataaccaagtttctagtccgattcacagagatgcttttgcttatcaacctcgtgctgagactcttaagtctgttggtgttgatccatct |
40051800 |
T |
|
| Q |
201 |
catgtgtgacgactgtcactctgattaattactcaaggttct----------------ttccttttaatgttgttattgtggataaataaatcaatctat |
284 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
40051799 |
catgtgtgac---tgtcactcttattaattactcaaggttctaattttgtaaaattatttccttttaatgttgttattgtggataaataaatcaatcaat |
40051703 |
T |
|
| Q |
285 |
ggatatatgtttggtttggtatataagtaaattcgatacttgtttgttaatcacacgaaaacattaaccatgactagtttctcgttgaagaaatatatga |
384 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40051702 |
ggatatatgtttggtttggtatataagtaaattctatacttgtttgttaatcacacgaaaacattaaccatgactagtttctcgttgaagaaatatatga |
40051603 |
T |
|
| Q |
385 |
catataaagatttttaaatttaccacacagccctctaaagggaatgcaacattcacattgcaatttaagactcgaacaaagaccaccaaatgactgagca |
484 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
40051602 |
catataaagatttttaaatataccacacagccctctaaagggcatgcaacattcacattgcaatttaagactcgaacgaagaccaccaaatcactgagca |
40051503 |
T |
|
| Q |
485 |
agtttcacaatgctatta |
502 |
Q |
| |
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|||||||||||||||||| |
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| T |
40051502 |
agtttcacaatgctatta |
40051485 |
T |
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