View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_198 (Length: 207)
Name: NF19530_high_198
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_198 |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 26136769 - 26136640
Alignment:
| Q |
15 |
gagagaagaaggagaagactgaagtggaagagattgtttgaaattgaaagataacatagggttactatgtaattacttatttacccttattacttgtgga |
114 |
Q |
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| T |
26136769 |
gagagaagaagaagaagactgaagtggaagagattgtttgaaattgaaagataacatagggttactatgtaattacttatttacccttattacttgtgga |
26136670 |
T |
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| Q |
115 |
gttttgaagctagcaaagataagactatta |
144 |
Q |
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| T |
26136669 |
gttttgaagctaacaaagataagacaatta |
26136640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 25578462 - 25578333
Alignment:
| Q |
15 |
gagagaagaaggagaagactgaagtggaagagattgtttgaaattgaaagataacatagggttactatgtaattacttatttacccttattacttgtgga |
114 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25578462 |
gagagaagaagaagaagactgaagtggaagagattgtttgaaattgaacgataacaaagggttactatgtaattacttatttacccttattacttgtgga |
25578363 |
T |
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| Q |
115 |
gttttgaagctagcaaagataagactatta |
144 |
Q |
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| T |
25578362 |
gttttgaagctagcaaagataagacaatta |
25578333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 33852940 - 33852829
Alignment:
| Q |
27 |
agaagactgaagtggaagagattgtttgaaattgaaagataacatagggttactatgtaattacttatttacccttattacttgtggagttttgaagcta |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
33852940 |
agaagactgaagtggaagagattgtttgaaattgaaagataacaaagggttactaagtaattacttatttacccttattacttgtggag-tctgaagcta |
33852842 |
T |
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| Q |
127 |
gcaaagataagac |
139 |
Q |
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| T |
33852841 |
gcaaagataagac |
33852829 |
T |
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