View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19530_high_20 (Length: 513)

Name: NF19530_high_20
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19530_high_20
NF19530_high_20
[»] chr2 (2 HSPs)
chr2 (17-500)||(4783360-4783843)
chr2 (172-244)||(26616002-26616076)
[»] chr1 (2 HSPs)
chr1 (172-244)||(15474646-15474718)
chr1 (197-245)||(11788176-11788225)
[»] chr3 (2 HSPs)
chr3 (187-244)||(1885127-1885184)
chr3 (187-244)||(30528337-30528394)
[»] chr8 (3 HSPs)
chr8 (172-244)||(12503301-12503373)
chr8 (217-245)||(24628218-24628246)
chr8 (200-244)||(34743184-34743228)
[»] scaffold0500 (1 HSPs)
scaffold0500 (180-246)||(1099-1165)
[»] scaffold0027 (1 HSPs)
scaffold0027 (171-243)||(38240-38312)
[»] chr5 (1 HSPs)
chr5 (197-244)||(12066838-12066886)
[»] scaffold0097 (1 HSPs)
scaffold0097 (203-244)||(48082-48123)
[»] chr4 (2 HSPs)
chr4 (180-245)||(48136379-48136444)
chr4 (214-246)||(26310424-26310456)
[»] chr7 (1 HSPs)
chr7 (172-244)||(12868418-12868490)


Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 500
Target Start/End: Original strand, 4783360 - 4783843
Alignment:
Q  17 actttctgtgttttaaggcttagtttgttgacactatagcagctacttgttgaaactgcatatccacttgtatatacatctcactcttgtgaataataaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4783360 actttctgtgttttaaggcttagtttgttgacactatagcagctacttgttgaaactgcatatccacttgtatatacatctcactcttgtgaataataaa 4783459  T
Q  117 catggtcttttcatatatatctcactcttaactcaagctgaaagcaccatgtgtgttaagtcgcgcaagggtactttcaaccattcagttgggaggaagt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||  ||||||||||||||||||||    
T  4783460 catggtcttttcatatatatctcactcttaactcaagctgaaagca-------tgttaagtcgcgcaagggtactttcgtccattcagttgggaggaagt 4783552  T
Q  217 gttttttgttgggagaaaagcatttttcaattataatgttttatgatatgaagatactagccaaatgttgccaaggtaagcataattccaatatggataa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4783553 gttttttgttgggagaaaagcatttttcaattataatgttttatgatatgaagatactagccaaatgttggcaaggtaagcataattccaatatggataa 4783652  T
Q  317 tacaaattttccaattgaagatatggtcgttgaaaatgaatttactttggtaacatctaaatcacaaatatataaattgaagaaacactaaaac------ 410  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  4783653 tacaaatttttcaattgaagatatggtcgttgaaaatgaatttactttggtaacatctaaatcacaaatatataaattgaagaaacactaaaacaaaaca 4783752  T
Q  411 -----nnnnnnnnnctgtctctagaagctgagcaataaaactaattaaacttaaaatatggtctagtctcccataataaaactctaccttatata 500  Q
                  |||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4783753 aaaaaacaaaaaaactgtctctagaagctgagcaataaaac----taaacttaaaatatggtctagtctcccataataaaactctaccttatata 4783843  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 26616076 - 26616002
Alignment:
Q  172 ttaagtcgcgcaagggtactttcaaccattcagttgggaggaagtg--ttttttgttgggagaaaagcatttttc 244  Q
    ||||||| ||||||||||||||   |||||||||||||||| ||||  ||||||||||||| |||| ||||||||    
T  26616076 ttaagtcacgcaagggtacttttgtccattcagttgggagggagtgttttttttgttgggataaaatcatttttc 26616002  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 15474646 - 15474718
Alignment:
Q  172 ttaagtcgcgcaagggtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttc 244  Q
    ||||||||||||  |||||||||  ||||||| ||||||||||||||||||||||||||||| | ||||||||    
T  15474646 ttaagtcgcgcataggtactttcgtccattcaattgggaggaagtgttttttgttgggagaagaccatttttc 15474718  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 11788225 - 11788176
Alignment:
Q  197 ccattcagttgggaggaagtgttttttgttgggagaaa-agcatttttca 245  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11788225 ccattcagttgggaggaagtgttttttgttgggagaaagagcatttttca 11788176  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 1885184 - 1885127
Alignment:
Q  187 gtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttc 244  Q
    ||||||||  |||||||||||||||| ||||||||||| |||||||| ||||||||||    
T  1885184 gtactttcgcccattcagttgggagggagtgttttttgatgggagaagagcatttttc 1885127  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 30528394 - 30528337
Alignment:
Q  187 gtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttc 244  Q
    ||||||||| | |||||||||| ||  ||||||||||||||||||||||||| |||||    
T  30528394 gtactttcatcaattcagttggtagtgagtgttttttgttgggagaaaagcaattttc 30528337  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 12503373 - 12503301
Alignment:
Q  172 ttaagtcgcgcaagggtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttc 244  Q
    ||||||||||||  | |||||||  | |||||||||||||| |||||||||||||||||||| |||| |||||    
T  12503373 ttaagtcgcgcagagatactttcgtcgattcagttgggagggagtgttttttgttgggagaagagcaattttc 12503301  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 24628246 - 24628218
Alignment:
Q  217 gttttttgttgggagaaaagcatttttca 245  Q
    |||||||||||||||||||||||||||||    
T  24628246 gttttttgttgggagaaaagcatttttca 24628218  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 34743228 - 34743184
Alignment:
Q  200 ttcagttgggaggaagtgttttttgttgggagaaaagcatttttc 244  Q
    ||||||||||||| ||  |||||||||||||||| ||||||||||    
T  34743228 ttcagttgggagggagcattttttgttgggagaagagcatttttc 34743184  T

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Target: scaffold0500 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 1165 - 1099
Alignment:
Q  180 cgcaagggtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttcaa 246  Q
    ||||||||||||||||  ||| ||||||||||  |||| |||||| |||||||| ||||||||||||    
T  1165 cgcaagggtactttcattcatccagttgggagagagtgatttttgatgggagaagagcatttttcaa 1099  T

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Target: scaffold0027 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 38240 - 38312
Alignment:
Q  171 gttaagtcgcgcaagggtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcattttt 243  Q
    ||||||||||||| |||||||| |  ||||||| ||| ||||  ||||||||||||||||||| | |||||||    
T  38240 gttaagtcgcgcatgggtacttccgtccattcaattgagagggggtgttttttgttgggagaagaacattttt 38312  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 12066886 - 12066838
Alignment:
Q  197 ccattcagttgggaggaagtgtttttt-gttgggagaaaagcatttttc 244  Q
    |||||||||||||||| |||||||||| |||||||||| ||||||||||    
T  12066886 ccattcagttgggagggagtgtttttttgttgggagaagagcatttttc 12066838  T

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Target: scaffold0097 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 48082 - 48123
Alignment:
Q  203 agttgggaggaagtgttttttgttgggagaaaagcatttttc 244  Q
    |||||||| |||||||||||||||||||||| |||| |||||    
T  48082 agttgggatgaagtgttttttgttgggagaatagcaattttc 48123  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 48136379 - 48136444
Alignment:
Q  180 cgcaagggtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttca 245  Q
    |||||||||||||||| ||||| |||||   || ||| |||||||||||||||| ||| |||||||    
T  48136379 cgcaagggtactttcatccatttagttgactgggagtattttttgttgggagaagagcctttttca 48136444  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 26310424 - 26310456
Alignment:
Q  214 agtgttttttgttgggagaaaagcatttttcaa 246  Q
    ||||||||||||||||||||||||| |||||||    
T  26310424 agtgttttttgttgggagaaaagcaattttcaa 26310456  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 12868490 - 12868418
Alignment:
Q  172 ttaagtcgcgcaagggtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttc 244  Q
    ||||||| |||||||| ||||||| |||| || |||| ||  ||||||||||| |||||||| |||| |||||    
T  12868490 ttaagtcacgcaagggcactttcatccatgcacttggtagtgagtgttttttgatgggagaagagcaattttc 12868418  T

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