View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19530_high_25 (Length: 486)

Name: NF19530_high_25
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19530_high_25
NF19530_high_25
[»] chr4 (5 HSPs)
chr4 (24-468)||(42772238-42772678)
chr4 (1-44)||(21579907-21579950)
chr4 (1-44)||(38520445-38520488)
chr4 (1-44)||(56154502-56154545)
chr4 (7-44)||(47361562-47361599)
[»] chr7 (2 HSPs)
chr7 (1-45)||(3892196-3892240)
chr7 (2-36)||(22631623-22631657)
[»] chr5 (3 HSPs)
chr5 (8-44)||(22493600-22493636)
chr5 (1-44)||(20119649-20119692)
chr5 (1-44)||(34794765-34794808)
[»] chr3 (1 HSPs)
chr3 (1-44)||(28675669-28675712)
[»] chr6 (1 HSPs)
chr6 (7-47)||(18597371-18597411)


Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 24 - 468
Target Start/End: Complemental strand, 42772678 - 42772238
Alignment:
Q  24 cttattgttttgcgaaccaaatgctaaaaggggacgtagatgatctaactatccaatatccatcaagtaaaaatcacactcatgtgaata---cacatga 120  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||   |||||||    
T  42772678 cttattgttttgcaaaccaaatgctaaaaggggacgtagatgatctaactatcca-------tcgagtaaaaatcacactcatgtgaataatacacatga 42772586  T
Q  121 attttgctcgttcattgtataaataaaaggcaacatttgtgccaaaattagcgttcgaattaaatatcaactcctgtaattagttaacaatattgatgaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42772585 attttgctcgttcattgtataaataaaaggcaacatttgtgccaaaattagcgttcgaattaaatatcaactcctgttattagttaacaatattgatgaa 42772486  T
Q  221 taaatcaatgaaatctgagagttaatgaaatctgtatcttacttccgaaattattctatcatagtccatatatatttgccaataataattctattaattt 320  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42772485 taaatcaatgaaatctgagagttaatgaaatctgcatcttacttccgaaattattctatcatagtccatatatatttgccaataataattctattaattt 42772386  T
Q  321 ttctaaaacatatttcgccataatttattcaattaatctatttaatgcacctttgaaaaacgtgattggacaaaattacaggcctttccacaacgcttat 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42772385 ttctaaaacatatttcgccataatttattcaattaatctatttaatgcacctttgaaaaacgtgattggacaaaattacaggcctttccacaacgcttat 42772286  T
Q  421 gctgaattgttattaacaaagtaacagagagggtgaatttagttttac 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42772285 gctgaattgttattaacaaagtaacagagagggtgaatttagttttac 42772238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21579950 - 21579907
Alignment:
Q  1 atcttatactgttctgtccaatacttattgttttgcgaaccaaa 44  Q
    |||||||||||||||||||| |||||| |||||||| |||||||    
T  21579950 atcttatactgttctgtccagtacttactgttttgcaaaccaaa 21579907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 38520488 - 38520445
Alignment:
Q  1 atcttatactgttctgtccaatacttattgttttgcgaaccaaa 44  Q
    |||||||||||||||||||||||||  ||||||||| |||||||    
T  38520488 atcttatactgttctgtccaatactagttgttttgcaaaccaaa 38520445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 56154545 - 56154502
Alignment:
Q  1 atcttatactgttctgtccaatacttattgttttgcgaaccaaa 44  Q
    |||||||||||||||||||| ||||| ||||||||| |||||||    
T  56154545 atcttatactgttctgtccagtacttgttgttttgcaaaccaaa 56154502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 47361562 - 47361599
Alignment:
Q  7 tactgttctgtccaatacttattgttttgcgaaccaaa 44  Q
    |||||||||||||||||||||||||||||  |||||||    
T  47361562 tactgttctgtccaatacttattgttttgtaaaccaaa 47361599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3892196 - 3892240
Alignment:
Q  1 atcttatactgttctgtccaatacttattgttttgcgaaccaaat 45  Q
    |||||||||||||||||||| |||||| |||||||| ||||||||    
T  3892196 atcttatactgttctgtccagtacttactgttttgcaaaccaaat 3892240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 22631657 - 22631623
Alignment:
Q  2 tcttatactgttctgtccaatacttattgttttgc 36  Q
    |||| ||||||||||||||||||||||||||||||    
T  22631657 tcttgtactgttctgtccaatacttattgttttgc 22631623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 22493600 - 22493636
Alignment:
Q  8 actgttctgtccaatacttattgttttgcgaaccaaa 44  Q
    ||||||||||||||||||| |||||||||||||||||    
T  22493600 actgttctgtccaatacttgttgttttgcgaaccaaa 22493636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 20119692 - 20119649
Alignment:
Q  1 atcttatactgttctgtccaatacttattgttttgcgaaccaaa 44  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||    
T  20119692 atcttgtactgttctgtccaatacttactgttttgcaaaccaaa 20119649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34794808 - 34794765
Alignment:
Q  1 atcttatactgttctgtccaatacttattgttttgcgaaccaaa 44  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||    
T  34794808 atcttgtactgttctgtccaatacttactgttttgcaaaccaaa 34794765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28675712 - 28675669
Alignment:
Q  1 atcttatactgttctgtccaatacttattgttttgcgaaccaaa 44  Q
    ||||| |||||||||||||| ||||||||||||||| |||||||    
T  28675712 atcttgtactgttctgtccagtacttattgttttgcaaaccaaa 28675669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 18597371 - 18597411
Alignment:
Q  7 tactgttctgtccaatacttattgttttgcgaaccaaatgc 47  Q
    ||||||||||||||||||||| |||||| | ||||||||||    
T  18597371 tactgttctgtccaatacttactgttttacaaaccaaatgc 18597411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University