View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19530_high_28 (Length: 476)
Name: NF19530_high_28
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 7832141 - 7832415
Alignment:
| Q |
1 |
ttttgaaactatttcaaacataggaaccttttattccttcaaaagtaatacaaatcccttactctgaaaagggaacccaaacttcacactctcttgtccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7832141 |
ttttgaaactatttcaaacataggaaccttttattccttcaaaagtaatacaaatcccttagtctgaaaagggaacccaaacttcacactctcttgtccc |
7832240 |
T |
|
| Q |
101 |
aacattatcaaaccgaacaaagggaggttttggggaagcatctccataacatacaaaggttattcccaaaggctcctcggcaacccaaaaacacacccat |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
7832241 |
aacattatcaatccgaacaaagggaggttttggggaagca----------------------ttctcaaaggctcctcggcaacccaaaaacgcacccat |
7832318 |
T |
|
| Q |
201 |
ctctcgctaggaggagcaatattcaaattcctagtactattctttcttatatcacctgaaaagtggggaatgataaatgagttcgacatataattca |
297 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7832319 |
ctcttgctaggaggagcaatattcaaattcctagtactcttctttcttatatcacctgaaaagtggggaatgataaatgagttcgacatataattca |
7832415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 353 - 458
Target Start/End: Original strand, 7832530 - 7832635
Alignment:
| Q |
353 |
tgcaccatataaaagtccaagagagattctaaatcacaagatacaaacacactactcaaaaaatgctacatagaaaaaagtatttccatagttaacaaca |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7832530 |
tgcaccatataaaagtccaagagagattctaaatcacaagatacaaacacactactcaaaaaatgctacatagaaaaaagtatttccatagttaacaaca |
7832629 |
T |
|
| Q |
453 |
tggaag |
458 |
Q |
| |
|
|||||| |
|
|
| T |
7832630 |
tggaag |
7832635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 7832449 - 7832505
Alignment:
| Q |
296 |
catataaagtcaaaagataaaaagtagcattgttgcgataaacgtagaaatcaaggc |
352 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7832449 |
cataaaaagtcaaaagataaaaagtagctttgttgcgataaacgtagaaatcaaggc |
7832505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University