View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_29 (Length: 475)
Name: NF19530_high_29
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 12 - 457
Target Start/End: Complemental strand, 27055624 - 27055181
Alignment:
| Q |
12 |
agagacgtttggagaaagnnnnnnngtcgtatataacccatcgttttcattttttgtaggccattctttgaaagtagcaaagttttaatcctttaaatta |
111 |
Q |
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| T |
27055624 |
agagacgtttggagaaagaaaaaaagtcgtatataacccatcgttttcattttttgtaggccattctttgaaagtagcaaagttttaatcctttaaatta |
27055525 |
T |
|
| Q |
112 |
ttgcatgtatgatcattgtagctttcgtttgcatgaagatttaaccatttttcctgacctatcaaatcagtatttgtcatttaaggaaatatttactgtt |
211 |
Q |
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| T |
27055524 |
ttgcatgtatgatcattgtagctttcgtttgcatgaagatttaaccatttttcctgacctatcaaatcagtatttgtcatttaaggaaatatttactgtt |
27055425 |
T |
|
| Q |
212 |
ataaagttttaacgttatttgtaattttcttaagttagggtatgattatggttgattttttcatagaatacaatttagatgactctggtcttggagaggt |
311 |
Q |
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| T |
27055424 |
ataaagttttaacgttatttgtaattttcttaagttagggcatgattatggttgattttttcatagaatacaatttagatgactctggtcttggagaggt |
27055325 |
T |
|
| Q |
312 |
ttggagaaaacctcaaacaatacgtatatgtcactcatcaccaaggtttttacataggcaaaaaatttgaattcaaacccttcattgcatgaggtaaata |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27055324 |
ttggagaaaacctcaaacaatacgtatatgtcactcatcaccaaggtttttacataggcaaaaaatttgaattcaaacccttcattgcatgaggtaa--a |
27055227 |
T |
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| Q |
412 |
tatttattgatcaactttaccaattttcattggtctggttatacat |
457 |
Q |
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|||||||| ||||||||||||||||||||||||| | ||||||||| |
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| T |
27055226 |
tatttattaatcaactttaccaattttcattggtgtagttatacat |
27055181 |
T |
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