View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_31 (Length: 473)
Name: NF19530_high_31
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 6 - 466
Target Start/End: Original strand, 29095968 - 29096428
Alignment:
| Q |
6 |
cactcaccatcataccaagatctacgttatttggtggtgaggttagtcgattctaaactaaataagaatctctacattttctttctttgatttattttca |
105 |
Q |
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| T |
29095968 |
cactcaccatcataccaagacctacgttatttggtggtgaggttagtcgattctaaactaaataagaatctctacattttctttctttgatttattttca |
29096067 |
T |
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| Q |
106 |
tttgtctttaattgattaaagagtaagtaaaaggagtctttttattnnnnnnnnttgtgaatttcagatacaaatatggctggctatggcttatgaggcc |
205 |
Q |
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| T |
29096068 |
tttgtctttaattgattaaagagtaagtaaaaggagtctttttattaaaaaaa-ttgtgaatttcagatacaaatatggctggctatggcttatgaggcc |
29096166 |
T |
|
| Q |
206 |
aataatcgccataaagattgcattgatctttacaagcaattagaaaagtcgcaccctagtattagcatcaaacgtcaagctgcagaacttcgttacattt |
305 |
Q |
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| T |
29096167 |
aataatcgccataaagattgcattgctctttacaagcaattagaaaattcgcaccctagtattagcatcaaacgtcaagctgcagaacttcgttacattt |
29096266 |
T |
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| Q |
306 |
tggaagcaccaaagctcaagataacgcaagaagagatggtgactatacccttgattggttccagttatgacaggtcatttgactcttcatgttactaatt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29096267 |
tggaagcaccaaagctcaagataacgcaagaagagatggtgactatacccttgattggttccagttatgacaggtcatttgactcttcatgttactaatt |
29096366 |
T |
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| Q |
406 |
aagattcattcaagtctatttgtttattacattcttgattttcctttggaat-tgatgatgt |
466 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29096367 |
aagattcattcaagtctatttgtttattacattcttgattttcctttggaatatgatgatgt |
29096428 |
T |
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