View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_32 (Length: 468)
Name: NF19530_high_32
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 21 - 463
Target Start/End: Complemental strand, 38950501 - 38950059
Alignment:
| Q |
21 |
ctagttaggcagagtaatgttgttttgatgagaagcattgatggctaatggaacagtatagtagacacaacataactagagctatgcatattcattcatg |
120 |
Q |
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| T |
38950501 |
ctagttaggcagagtaatgttgttttgatgagaagcattgatggctaatggaacagtatagtagacacaacataactagagctatgcatattcattcatg |
38950402 |
T |
|
| Q |
121 |
gcttaaggagaatgaaagcgataactctttactctatggtctgttaggtggtcataggtgcccactttggaccctcatagcccttcccttattacaccta |
220 |
Q |
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| T |
38950401 |
gcttaaggagaatgaaagcgataactctttactctatggtctgttaggtggtcataggtgcccactttggaccctcatagcccttcccttattacaccta |
38950302 |
T |
|
| Q |
221 |
acctacattacattagtactagtagtttctacattggcgatgtagattcaatactcgtagttcttattgtatagcaagtgtgagttaaaagttcgatgtt |
320 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38950301 |
acctacattacattagtactagtagtttttacattggcggtgtagattcaatactcatagttcttattgtatagcaaatgtgagttaaaagttcgatgtt |
38950202 |
T |
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| Q |
321 |
gagtattgagatccataaactcaatatcttaaagttatgcattaagatatgatgtccaacttaattgtatgattgtttttgatcaaatgtggttgatctc |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
38950201 |
gagtattgagatccataaactcaatatcttaaagttatgcattaagatatgatgtccaactcaattgtataattgtttttgatcaaatgtggttgatctc |
38950102 |
T |
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| Q |
421 |
tcagactctccacatacccccaacaatttctacctatgctact |
463 |
Q |
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||| |||| |||||||||||||||||||||||| ||||||||| |
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| T |
38950101 |
tcatactccccacatacccccaacaatttctacgtatgctact |
38950059 |
T |
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