View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_35 (Length: 462)
Name: NF19530_high_35
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 7 - 444
Target Start/End: Original strand, 21199577 - 21200014
Alignment:
| Q |
7 |
tcgaagaatattgacaaataactttagaaacttatcattgcaatagtcaaatgatggctatgaggttgttctagccagtcacgaaaggctgtcatcccac |
106 |
Q |
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| T |
21199577 |
tcgaataaaattgacaaataactttagaaacttatcattgcaatagtcaaatgatggctatgaggttgttctagccagtcacgaaaggctgtcatcccac |
21199676 |
T |
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| Q |
107 |
gtccactctcttggcgtccctttctttcacccacttgtaaaatctcgttgaagtcccccattaccataaacggatatgctgcacgccttgaccttaactt |
206 |
Q |
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| T |
21199677 |
gtccactctcttggcgtccctttctttcacccacttgtaaaatctcgttgaagtcccccattaccataaacggatatgctgcacgccttgaccttaactt |
21199776 |
T |
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| Q |
207 |
gtcctcaatggcatcatacactgcttttctagcctttaatccacgtggaagatacaccaacatgatagacactttcataggttgtggatattgaacctca |
306 |
Q |
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| T |
21199777 |
gtcctcaatggcatcatacactgcttttctagccttcaatccacgaggaagatacaccaacatgatagacactttcacaggttgtggatattgaacccca |
21199876 |
T |
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| Q |
307 |
ccttcaacataaatccatctattatctatttcttcgtgcaactttgtgaaatgatttttactccaacctagtattagtcaagtacttgttcgtccacttc |
406 |
Q |
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| T |
21199877 |
ccttcaacataaatccatctattatctatttcttcgtgcaactttgtgaaatgatttttactccaacctagtattagtccagtacttgtttgtccacttc |
21199976 |
T |
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| Q |
407 |
catctcctaccccctacaatgaagttatgatacatttt |
444 |
Q |
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| T |
21199977 |
catctcctaccccctacaatgaagatatgatacatttt |
21200014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 315 - 444
Target Start/End: Complemental strand, 21202870 - 21202741
Alignment:
| Q |
315 |
ataaatccatctattatctatttcttcgtgcaactttgtgaaatgatttttactccaacctagtattagtcaagtacttgttcgtccacttccatctcct |
414 |
Q |
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| T |
21202870 |
ataaatccatctattatctatttcttcgtgcaactttgtgaaatgatttttacaccaacctagtattagtccagtacttgctcgtccacttccatctcct |
21202771 |
T |
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| Q |
415 |
accccctacaatgaagttatgatacatttt |
444 |
Q |
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| T |
21202770 |
accccctgcaatgaagatatgatacatttt |
21202741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 2948386 - 2948312
Alignment:
| Q |
7 |
tcgaagaatattgacaaataactttagaaacttatcattgcaatagtcaaatgatggctatgaggttgttctagc |
81 |
Q |
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| T |
2948386 |
tcgaataaaattgacaaataactttagaaacttaacattgcaatagtcaaatgatggctatgagcctgttctagc |
2948312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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