View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_39 (Length: 460)
Name: NF19530_high_39
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 21 - 448
Target Start/End: Original strand, 4108091 - 4108518
Alignment:
| Q |
21 |
ttcgagaccatgcagattcagcaatctttatggatactaatcaaattaagtaattatcagtaataaaaattattctacaaacagccataccacaaccctc |
120 |
Q |
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| T |
4108091 |
ttcgagaccatgcagattcagcaatctttatggatactaatcaaattaagtaattatcagtaataaaaattattctacaaacagccataccacaaccctc |
4108190 |
T |
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| Q |
121 |
tcaaccaaattgcatgagtaatacaagataatctatgtaatacacctctaaagtttcagcaattttgtatttcctatgctatagtactattacgttcatg |
220 |
Q |
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| T |
4108191 |
tcaaccaaattgcatgagtaatacaagataatctatgtaatacacctctaaagtttcagtaattttgtatttcctatgctatagtactattacgttcatg |
4108290 |
T |
|
| Q |
221 |
gacaaccaatatgctacagcatttaggaaatgagcgaagtttgtcactgaggagagatctttccaaccttatgaacccatctctcaagcctaagttgctt |
320 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4108291 |
gacaaccaatatgccacagcatttaggaaatgagcgaagtttgtcactgaggagagatctttccaaccttatgaacccatctctcaagcctaagttgctt |
4108390 |
T |
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| Q |
321 |
caaagcaggcccacagtcaggtttacgtttatgtgggaattgccatttccctgtaatctccatgacatttgactgttgaaaattggttgcttctgtcagt |
420 |
Q |
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| T |
4108391 |
caaagcaggcccacagtcaggtttacgtttatgtgggaattgccatttccctgtaatctccatgacatttgactgttgaaaattggttgcttctgtcagt |
4108490 |
T |
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| Q |
421 |
gcctttctttttgcaacaccatattctt |
448 |
Q |
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| T |
4108491 |
gcctttctttttgcaacaccattttctt |
4108518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 85 - 440
Target Start/End: Original strand, 4131381 - 4131736
Alignment:
| Q |
85 |
aaaaattattctacaaacagccataccacaaccctctcaaccaaattgcatgagtaatacaagataatctatgtaatacacctctaaagtttcagcaatt |
184 |
Q |
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||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| |
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| T |
4131381 |
aaaaattattctacaaacaaccataccaca-cactctgaaccaaattgcatgagtaatacaagatagtctatgtaatacacctcgaatgtttcagcaatt |
4131479 |
T |
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| Q |
185 |
ttgtatttccta-tgctatagtactattacgttcatggacaaccaatatgctacagcatttaggaaatgagcgaagtttgtcactgaggagagatctttc |
283 |
Q |
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|||||||||||| || ||||||||||||||||| |||||||| ||||||||| || |||||||| |||||| || | ||||| ||||||||||| |||| |
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| T |
4131480 |
ttgtatttcctaatgttatagtactattacgttaatggacaaataatatgctatagaatttaggacatgagccaactatgtcaatgaggagagatatttc |
4131579 |
T |
|
| Q |
284 |
caaccttatgaacccatctctcaagcctaagttgcttcaaagcaggcccacagtcaggtttacgtttatgtgggaattgccatttccctgtaatctccat |
383 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |||||| | |||||||||||||||||||| || |
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| T |
4131580 |
caaccttttgaacccatcgctcaagcctaagttgcttcaaagcaggcccacgatcaggcttacgtttctgtgggcaatgccatttccctgtaatctcgat |
4131679 |
T |
|
| Q |
384 |
gacatttgactgttgaaaattggttgcttctgtcagtgcctttctttttgcaacacc |
440 |
Q |
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|||||| |||||||||| ||||||||||||||||| ||||||||| ||||||||||| |
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| T |
4131680 |
gacattggactgttgaagattggttgcttctgtcaatgcctttctctttgcaacacc |
4131736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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