View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_44 (Length: 450)
Name: NF19530_high_44
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_44 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 45322735 - 45322301
Alignment:
| Q |
1 |
acaaccataaagtgaaaggcaagtttcgaagtccaattgtacnnnnnnnntgcatttaaagacgaagaaagcatagtatgcaataacgttgcctgggcta |
100 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45322735 |
acaatcataaagtgaaaggcgagtttcgaagtccaattgtacaaaaaaaatgcatttgaagacgaagaaagcatagtatgcaataacgttgcctgggcta |
45322636 |
T |
|
| Q |
101 |
gtgaccaagttttcctcttgtaaacaatctctaatgtttctgtggagctgccaaatgaagcggccgctgatttggacaaaa-cttactcaatcggatnnn |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||| ||||||| |
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| T |
45322635 |
gtgaccaagttttcctcttgtaaacaatctctaatgtttctgtggagctgccaaatgaagcggccactgatttggaaaaaaacttactcgatcggataaa |
45322536 |
T |
|
| Q |
200 |
nnnnttcaatatgcattcaacaaaggtagtcgttgtatggtattattgattaaattcataactaagtaaatcctaacaccagtgcttcttaatcttgctt |
299 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
45322535 |
aaaattcaatatgcattcaacaaaggtaatcgttgtatggtattattgattaaattcataactaagtaaatcctaacaccagtgcttcttaatcttgcct |
45322436 |
T |
|
| Q |
300 |
cattcttgaatggctccctcgatggcgtaaatttgtgatattatctcattgttaagcatatgattttacttgttctgcatgattaagaagtttattaact |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45322435 |
cattcttgaatggctccctcgatggcgtaaatttgtgatattatctcattgttaagcatatgattttacttgttctgcatgattaagaagtttatcaact |
45322336 |
T |
|
| Q |
400 |
actttctcgggaatgtttctctgtctcaattacca |
434 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| |
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| T |
45322335 |
actttctcgggaatgtttctctgtatcaattacca |
45322301 |
T |
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Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 14237901 - 14237507
Alignment:
| Q |
1 |
acaaccataaagtgaaaggcaagtttcgaagtccaattgtacnnnnnnnntgcatttaaagacgaagaaagcatagtatgcaataacgttgcctgggcta |
100 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||||||| | |||| ||||||| | | ||| |||||||||| ||||||||| ||||||||||||| |
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| T |
14237901 |
acaagcataaagtgaaaggcgagtttagaagtccagtggtacaaataaa-tgcatttgagggcgacgaaagcatagaatgcaataatgttgcctgggcta |
14237803 |
T |
|
| Q |
101 |
gtgaccaagttttcctcttgtaaacaatctctaatgtttctgtggagctgccaaatgaagcggccgctgatttgg-acaaaacttactcaatcggatnnn |
199 |
Q |
| |
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|||||| ||| ||||||||| |||||||||||||||||||||| |||||||||| ||| | || |||||||||| || ||||| ||||| ||| | |
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| T |
14237802 |
gtgaccgagtattcctcttgcaaacaatctctaatgtttctgtcgagctgccaactgatcctgctgctgatttggctcataacttgctcaaacgggttga |
14237703 |
T |
|
| Q |
200 |
nnnnttcaatatgcattcaacaaagg----tagtcgttgtatggtattattgattaaattcataactaagtaaatcctaacaccagtgcttcttaatctt |
295 |
Q |
| |
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||||| |||||| | ||| ||| || | || ||| ||||||||||||| ||||||||||| ||||||||||| | | |||||||||||| |
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| T |
14237702 |
aaaattcaacatgcatgctacagaggtaattattacttacatgatattattgattaagttcataactaaacaaatcctaaca-ctggacttcttaatctt |
14237604 |
T |
|
| Q |
296 |
gcttcattcttgaatggctccctcgatggcgtaaatttgtga------tattatctcattgttaagcatatgattttacttgttctgcatgattaag |
386 |
Q |
| |
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|| | |||||||||||||||||| |||||| | |||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
14237603 |
gccttattcttgaatggctcccttgatggcatgtatttgtaatattattattatctcattgttaagcgtatgattttactcgttctgcatgattaag |
14237507 |
T |
|
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