View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_47 (Length: 437)
Name: NF19530_high_47
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_47 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 421
Target Start/End: Original strand, 6861822 - 6862234
Alignment:
| Q |
10 |
ataattctcaagtttgtaggttatgcgtaattccttagtaaatccatagtgaagttggtgattctcgttaactttacatggatgtgcctctcctaatcta |
109 |
Q |
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| T |
6861822 |
ataattctcaagtttgtaggttatgcgtaattccttagtaaatccatagcgaagttggtgattctcgttaactttacatggatgtgcctctcctaatcta |
6861921 |
T |
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| Q |
110 |
aannnnnnnctnnnnnnnn-ggttacatttgtattcttgtatatgtctaatttattttcaaatgaatcatcaatttagtttctaaaattgtaagatactc |
208 |
Q |
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| T |
6861922 |
aatttttttctataaaaaaaggttacatttgtattcttgtatatgtctaatatattttcaaatgaatcatcaatttagtttctaaaattgtaagatactc |
6862021 |
T |
|
| Q |
209 |
caaatttaatcccataaattaataatattacaaactactagtccttggtattgaaaaccgttgattatattagttcttttactgatatttgattgagaat |
308 |
Q |
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| T |
6862022 |
caaatttaatcccataaattaataatattacaaactactagtccttggtattgaaaaccgttgattatattagttcttttactgatatttgattgagaat |
6862121 |
T |
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| Q |
309 |
tttcaaattcataaatcattttaaaatttcgttaacttgagagactaagtcggcatcgtgcaacaacactcttcattttcctaccaagttgaaagaaata |
408 |
Q |
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| T |
6862122 |
tttcaaattcataaatcattttaaaatttcgttaacttgagagactaagtcggcatcatgcaacaacactcttcattttcctaccaagttgaaagaaata |
6862221 |
T |
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| Q |
409 |
ctactgattaaac |
421 |
Q |
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| T |
6862222 |
ctactgattaaac |
6862234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 362 - 421
Target Start/End: Original strand, 27632630 - 27632689
Alignment:
| Q |
362 |
catcgtgcaacaacactcttcattttcctaccaagttgaaagaaatactactgattaaac |
421 |
Q |
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| T |
27632630 |
catcgtgcaacaatactctttattttcctaccatgttgaaagaaatactactgtttaaac |
27632689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 21538733 - 21538782
Alignment:
| Q |
297 |
ttgattgagaattttcaaattcataaatcattttaaaatttcgttaactt |
346 |
Q |
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| T |
21538733 |
ttgattgagaattttcaaattcatagatcattttgaaattttgttaactt |
21538782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 20638184 - 20638135
Alignment:
| Q |
297 |
ttgattgagaattttcaaattcataaatcattttaaaatttcgttaactt |
346 |
Q |
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| T |
20638184 |
ttgattgagaattttcaaattcatagatcattttgaaattttgttaactt |
20638135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 10141692 - 10141652
Alignment:
| Q |
301 |
ttgagaattttcaaattcataaatcattttaaaatttcgtta |
342 |
Q |
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| T |
10141692 |
ttgagaattttcaaattcacaaatcatttt-aaatttcgtta |
10141652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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