View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_49 (Length: 435)
Name: NF19530_high_49
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 22339247 - 22338831
Alignment:
| Q |
1 |
tccttataaaccgcgaaaacatgattacacaccgcgtatgcacggtaattattcgtgcaatgaaggtccataacctggcagagaacagtggttgcttcgg |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||| |
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| T |
22339247 |
tccttataaaccgagaaaacatgattacacaccgcgtatgcacggtaattattcgtgcaatgaaggtccataagctggcggagaacggtggttgcttcgg |
22339148 |
T |
|
| Q |
101 |
ggaaaagacgagcatgtgtgagaatgtgaagcaggatggagtaggaaagggaatgtgggcggtaatgagagttttgtgtggcgagatggaagaaggagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22339147 |
ggaaaagacgagcatgtgtgagaatgtgaagcaggatggagtaggaaagggaatgtgggcggtaatgagagttttgtgtggcgagatggaagaaggagag |
22339048 |
T |
|
| Q |
201 |
gcaggcggaggggtggagacggaggcgacggaggagggaatcagtgaggtggtcggagtatttgaaggtgagattgtggagggattgaggacggttgagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22339047 |
gcaggcggaggggtggagacggaggcgacggaggagggaatcagtgaggtggtcggagtatttgaaggtgagattgtggagggattgaggacggttgagg |
22338948 |
T |
|
| Q |
301 |
atgaggaggcgggtgattcggtcgaggagttcgggttgagggaggtttgttgtttcttgacgaagcttccattgaagaggaatggaagagtggaaggaac |
400 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22338947 |
atgaggaggcgggtgattcggtcgaggagttcggggtgagggaggtttgttgtttcttgacgaagcttccattgaagaggaatggaagagtggaaggaac |
22338848 |
T |
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| Q |
401 |
gttgtgtgagagagagg |
417 |
Q |
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||||||||||||||||| |
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| T |
22338847 |
gttgtgtgagagagagg |
22338831 |
T |
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