View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19530_high_5 (Length: 769)
Name: NF19530_high_5
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 183 - 754
Target Start/End: Original strand, 41132191 - 41132745
Alignment:
| Q |
183 |
aattaatgttttttctttgttactccatcatatgcatggagtactagtatgtatcagttgtttattttaatgtgtgcgcattaatcttgctcgatgacaa |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
41132191 |
aattaatgttttttctttgttactccatcatatgcatggagtactagtatgtatcagttgtttattttaatgtgtgtgcattaatcttggtcgatgacaa |
41132290 |
T |
|
| Q |
283 |
cataattacaataaactatccataatgatccagaataattacaataaactactgcataataattaaatcaagattggatctggctaaacttaaggacaaa |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41132291 |
cataattacaataaactatccataatgatccagaataattacaataaactactgcataataattaaatcaagattggatctggctaaacttaaggacaaa |
41132390 |
T |
|
| Q |
383 |
tttgactctaaaaccaaggctaataaatcagatagttttccttttgtactcaaatgaaacggtgtttttagaatcgggtccaactagctagttgaaccga |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41132391 |
tttgactctaaaaccaaggctaataaatcagatagttttccttttgtactcaaatgaaacggtgtttttagaatcgggtccaactagctagttgaaccga |
41132490 |
T |
|
| Q |
483 |
aacttggttaatctttggagtttcaatcttcattcaggttgattttcaaactcttatagcatcttcaatcacaagtttgtaaggaaattaagtttgattc |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41132491 |
aacttggttaatctttggagtttcaatcttcattcaggttgattttcaaactcttatagcatcttcaatcac-----------------aagtttgattc |
41132573 |
T |
|
| Q |
583 |
tataaccactattaaattctcacaccgtcaaatcatacttatactaatacaactcaaacatattttacttcaatgatagaaaaattaagcaacttttatg |
682 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41132574 |
tataaccactattaaattctcacaccgtgaaatcatacttatactaatacaactcaaacatattttacttcaatgatagaaaaattaagcaacttttatg |
41132673 |
T |
|
| Q |
683 |
aaatacactttaaatattatacacttagacaatccagaaaaagagtcaaatatataatttttacgtaccatt |
754 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41132674 |
aaatacactttaaatattagacacttagacaatccagaaaaagagtcaaatatataatttttacgtaccatt |
41132745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 41131922 - 41131870
Alignment:
| Q |
19 |
tcgagaagtgtttttaatttccataggggttcaagcgaaataacgatattttt |
71 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
41131922 |
tcgagaattgtttttaatttccataggtgttcaagcgaaataatgatattttt |
41131870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 634 - 686
Target Start/End: Original strand, 2875235 - 2875287
Alignment:
| Q |
634 |
actcaaacatattttacttcaatgatagaaaaattaagcaacttttatgaaat |
686 |
Q |
| |
|
|||||| |||||||| ||||||||||| || ||||||||||||||||| |||| |
|
|
| T |
2875235 |
actcaagcatatttttcttcaatgataaaataattaagcaacttttataaaat |
2875287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 31884422 - 31884464
Alignment:
| Q |
100 |
taattagggtcttgttaactagtgtcccggaggcacttgttaa |
142 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
31884422 |
taataagggtcttgttaaccagtgtcctggaggcacttgttaa |
31884464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 16973121 - 16973158
Alignment:
| Q |
114 |
ttaactagtgtcccggaggcacttgttaacattttcct |
151 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
16973121 |
ttaactagtgtcccgggggcactggttaacattttcct |
16973158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 29458188 - 29458143
Alignment:
| Q |
97 |
ttttaattagggtcttgttaactagtgtcccggaggcacttgttaa |
142 |
Q |
| |
|
|||| ||| |||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
29458188 |
tttttatttgggtcttgttaactagtgccccggaggcactggttaa |
29458143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University