View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_61 (Length: 408)
Name: NF19530_high_61
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_61 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Original strand, 9645930 - 9646309
Alignment:
| Q |
17 |
atgcttaagggaaaatgtccattttccataactggaataggattccaaagtagaaattccaatgtgttacagaaatacataatgtttacaagaaatttca |
116 |
Q |
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| T |
9645930 |
atgcttaagggaaaatgtccattttccataactggaataggattccaaagtagaaattccaatgtgttacagaaatacataatgtttacaaaaaatttca |
9646029 |
T |
|
| Q |
117 |
taccttgaacaaggacaaacttttggccctcaaaaacatgaacaaggacaaactttttcttttcctattggtttgaaactgaatctaacaaggaattttc |
216 |
Q |
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| T |
9646030 |
taccttgaacaaggacaaacttttggccctcaaaaacttgaacaaggacaaactttttcttttcctattggtttgaaactgaatctaacaaggaattttc |
9646129 |
T |
|
| Q |
217 |
tgttttatggtaatgaaaaccaggaagaggactcacttactttccatgtttcctgtttcaatttacacaaataatagtaagtattacaaaatgcattcta |
316 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
9646130 |
tgttttatggtaaagaaaaccaggaagaggactcacttactttccatgtttcctgtttcaatttacacaaaaaatagtaagcattacaaaatgcattcta |
9646229 |
T |
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| Q |
317 |
gaaattttctatgtcgacgcgaagacctctttggtggtgatttgtaagcgtttcttgagtttgacgcctgccctgacctt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9646230 |
gaaattttctatgtcgacgcgaagacctctttggtggtgatttgtaagcgtttcttgagtttgacgcctgccctgacctt |
9646309 |
T |
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