View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_70 (Length: 388)
Name: NF19530_high_70
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_70 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 674688 - 675058
Alignment:
| Q |
1 |
taccgaaaaattcaagtatatatgtctgaattcaaattgtcattgcagtgtgctggaactacaagttttttacaattgatgtactaacacattagactag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
674688 |
taccgaaaaattcaagtatatatgtctgaattcaaattgtcattgcagtgtgctggaactacaagtttgttacaattgatgtactaacacattagactag |
674787 |
T |
|
| Q |
101 |
aataacacagtgaaacatacaagtcaaatatattagactttgaagattgtattttcttccaaacaacatataataataaaaccagagacaagtttagcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
674788 |
aataacacagtgaaacatacaagtcaaatatattagactttgaagattgtattttcttccaaacaacatataataataaaaccagagacaagtttagcct |
674887 |
T |
|
| Q |
201 |
gtctattaagaacctatagttttttcaccccatctagttttactacataataaataatcaaaatgaacttaaaattccacggccctaaaactataatcct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
674888 |
gtctattaagaacctatagttttttcaccccatctagttttactacataataaataatcaaaatgaacttaaaattccacggccctaaaactataatcct |
674987 |
T |
|
| Q |
301 |
ttttaacagccatcttcagcaacgctccagaccagaaaatgaacctaagcaattaagccagctagtgaatt |
371 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
674988 |
ttttaacagccatcttcagcaacgctccagaccagaaaatgaacctaagcaattaagccagctagtgaatt |
675058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 749284 - 749654
Alignment:
| Q |
1 |
taccgaaaaattcaagtatatatgtctgaattcaaattgtcattgcagtgtgctggaactacaagttttttacaattgatgtactaacacattagactag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
749284 |
taccgaaaaattcaagtatatatgtctgaattcaaattgtcattgcagtgtgctggaactacaagtttgttacaattgatgtactaacacattagactag |
749383 |
T |
|
| Q |
101 |
aataacacagtgaaacatacaagtcaaatatattagactttgaagattgtattttcttccaaacaacatataataataaaaccagagacaagtttagcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
749384 |
aataacacagtgaaacatacaagtcaaatatattagactttgaagattgtattttcttccaaacaacatataataataaaaccagagacaagtttagcct |
749483 |
T |
|
| Q |
201 |
gtctattaagaacctatagttttttcaccccatctagttttactacataataaataatcaaaatgaacttaaaattccacggccctaaaactataatcct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
749484 |
gtctattaagaacctatagttttttcaccccatctagttttactacataataaataatcaaaatgaacttaaaattccacggccctaaaactataatcct |
749583 |
T |
|
| Q |
301 |
ttttaacagccatcttcagcaacgctccagaccagaaaatgaacctaagcaattaagccagctagtgaatt |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
749584 |
ttttaacagccatcttcagcaacgctccagaccagaaaatgaacctaagcaattaagccagctagtgaatt |
749654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 179 - 370
Target Start/End: Original strand, 9564214 - 9564406
Alignment:
| Q |
179 |
aaaccagagacaagtttagcctgtctattaagaacctatagttttttcaccccatctagttttactacataataaataatcaaaatgaactt-aaaattc |
277 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| ||||||| |
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| T |
9564214 |
aaaccagagacaagtttagcttgtctatacagaacatatagttttttcacctcatctagttttactacatagtaaataatcaaaataaacttaaaaattc |
9564313 |
T |
|
| Q |
278 |
cacggccctaaaactataatcctttttaacagccatcttcagcaacgctccagaccagaaaatgaacctaagcaattaagccagctagtgaat |
370 |
Q |
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|||| ||||||||||| ||||||||| || |||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
9564314 |
cacgaccctaaaactacgatcctttttcaccgccatcttcagcaatactccagaccacaaaatgaacctaagcaattcagccagctagtgaat |
9564406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 99 - 370
Target Start/End: Complemental strand, 2634581 - 2634311
Alignment:
| Q |
99 |
agaataacacagtgaaacatacaagtcaaatatattagactttgaagattgtattttcttccaaacaacatataataataaaaccagagacaagtttagc |
198 |
Q |
| |
|
|||||||||| ||||||||| ||||||||| |||||| |||||||||||||||||||||| |||||||||||| |||||| | || |||| ||||||||| |
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| T |
2634581 |
agaataacacggtgaaacatgcaagtcaaacatattacactttgaagattgtattttcttacaaacaacatattataatacagcccgagaaaagtttagc |
2634482 |
T |
|
| Q |
199 |
ctgtctattaagaacctatagttttttcaccccatctagttttactacataataaataatcaaaatgaactt-aaaattccacggccctaaaactataat |
297 |
Q |
| |
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|| |||||| ||||| ||||||||||||||| |||| || ||||| ||||||||||||||||||||||||| ||||||| ||||||||||| | |
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| T |
2634481 |
ctatctatttagaacatatagttttttcacctcatcaaggtttacaccataataaataatcaaaatgaacttggggattccacaaccctaaaactactac |
2634382 |
T |
|
| Q |
298 |
cctttttaacagccatcttcagcaacgctccagaccagaaaatgaacctaagcaattaagccagctagtgaat |
370 |
Q |
| |
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||||||| || ||||||||||||| |||||||||||| || || ||| |||||||| |||||| ||| |||| |
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| T |
2634381 |
cctttttcacggccatcttcagcaccgctccagaccacaagat--accgaagcaattcagccagatagagaat |
2634311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 362
Target Start/End: Complemental strand, 2485631 - 2485477
Alignment:
| Q |
209 |
agaacctatagttttttcaccccatctagttttactacataataaataatcaaaatgaacttaa-aattccacggccctaaaactataatcctttttaac |
307 |
Q |
| |
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||||| ||||||||||||| | |||||||||| ||| || || ||||||| ||| |||||||| ||||| || | ||| |||||| | || |||| || |
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| T |
2485631 |
agaacatatagttttttcatctcatctagtttgactccacaagaaataattaaactgaacttaggaattcgacaacactagaactattaccccttttcac |
2485532 |
T |
|
| Q |
308 |
agccatcttcagcaacgctccagaccagaaaatgaacctaagcaattaagccagc |
362 |
Q |
| |
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||||||||||||| ||||||||||| ||||||||| ||||||| | ||||||| |
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|
| T |
2485531 |
caccatcttcagcaaggctccagaccacaaaatgaacataagcaactcagccagc |
2485477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 2447172 - 2447116
Alignment:
| Q |
298 |
cctttttaacagccatcttcagcaacgctccagaccagaaaatgaacctaagcaatt |
354 |
Q |
| |
|
||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
2447172 |
cctttttcaccgccatcttcagcaaagctccagaccataaaatgaacctaagcaatt |
2447116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 2504487 - 2504375
Alignment:
| Q |
160 |
caaacaacatataataataaaaccagagacaagtttagcctgtctattaagaacctatagttttttcaccccatctagttttactacataataaataatc |
259 |
Q |
| |
|
||||||||| | ||||||||| |||||||||||||| ||| |||||| | ||| | ||| ||||||||| | |||||||| ||| || || |||||||| |
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| T |
2504487 |
caaacaacagacaataataaagtcagagacaagtttatcctatctatttaaaacatgtaggtttttcacctcctctagtttgacttcagaagaaataatc |
2504388 |
T |
|
| Q |
260 |
aaaatgaacttaa |
272 |
Q |
| |
|
||| |||||||| |
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|
| T |
2504387 |
aaacagaacttaa |
2504375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 128
Target Start/End: Complemental strand, 2496092 - 2496063
Alignment:
| Q |
99 |
agaataacacagtgaaacatacaagtcaaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
2496092 |
agaataacacagtgaaacatacaagtcaaa |
2496063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 111 - 370
Target Start/End: Complemental strand, 2810 - 2551
Alignment:
| Q |
111 |
tgaaacatacaagtcaaatatattagactttgaagattgtattttcttc--caaacaacatataataataaaaccagagacaagtttagcctgtctatta |
208 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||||||||||||| | | |||||||||| |||||||||| |||||||||| |||||||| |||||| |
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|
| T |
2810 |
tgaaacatgaaaatcaaacatattagactttgaagattgtattttttcctacaaacaacatttaataataaagccagagacaaatttagcctatctattc |
2711 |
T |
|
| Q |
209 |
agaacctatagttttttcaccccatctagttttactacataataaataatcaaaatgaacttaa-aattccacggccctaaaactataatcctttttaac |
307 |
Q |
| |
|
||||| |||||||||||| |||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||| | ||||||| || |
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|
| T |
2710 |
agaaca---agttttttcacctcatcaagttttacaccataataaataatcaaaatgaacttaggaattccacaaccctaaaactattaccctttttcac |
2614 |
T |
|
| Q |
308 |
agccatcttcagcaacgctccagaccagaaaatgaacctaagcaattaagccagctagtgaat |
370 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| |||| |
|
|
| T |
2613 |
cgccatattcagcaacgctccagacccacaaatgaacctaagcaattcagccagctagagaat |
2551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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