View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_71 (Length: 386)
Name: NF19530_high_71
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_71 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 94 - 379
Target Start/End: Complemental strand, 34381319 - 34381034
Alignment:
| Q |
94 |
ttgtgaacatcacttacacaaataaacagataaattaagtccagtgttctacttctcttttgttttccacggtagagagggtttaccctagaaaacagaa |
193 |
Q |
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| T |
34381319 |
ttgtgaacatcacttacacaaataaacagataaattaagtccagtgttctacttctcttttgttttccacggtagagagggtttaccctagaaaacagaa |
34381220 |
T |
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| Q |
194 |
gaggggtcgtacatttgcctcgatcatctgcttaccttgttgtgctagtgattgttgtgacttcgcaactataaacttgattactcttccgaatcatata |
293 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34381219 |
gaggagtcgtacatttgcctcgatcatctgcttaccttgttgtgctagtcattgttgtgacctcgcaactataaacttgattactcttccgaatcatata |
34381120 |
T |
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| Q |
294 |
tagaaattagataacaaagatttgaggatatctggcttatgatttataacattgctttaaggtttttcacttgaaggttcatatca |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
34381119 |
tagaaattagataacaaagatttgaggatatctggcttatgatttacaacattgctttaaggtttttcacttgaaggttcacatca |
34381034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 34381371 - 34381296
Alignment:
| Q |
18 |
cgatgttgtaaattatcaaagttacttacctctaagttttgtgatctgtgttttgtgtacatcacttacacaaata |
93 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34381371 |
cgatgttataaattatcaaagttacttacctctaagttttgtgatctgtgttttgtgaacatcacttacacaaata |
34381296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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