View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_72 (Length: 381)
Name: NF19530_high_72
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_72 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 84 - 375
Target Start/End: Original strand, 240505 - 240796
Alignment:
| Q |
84 |
tttcacatttatggtttcacaagtcatatcggttttccggtgtataaaaattaaatccattttactttgctttcaaatttaggtgttacactcttatcgg |
183 |
Q |
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| T |
240505 |
tttcacatttatggtttcacaagtcatatcggttttccggtgtataaaaattaaatccattttactttgctttcacatttaggtgttacactcttatcgg |
240604 |
T |
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| Q |
184 |
cttcacacatggaatttgctgtattgttctattttatgtctctatttaactaaggtgctaaaattttaccaaaactgagactcggaagattgcaatatga |
283 |
Q |
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| T |
240605 |
cttcacacatggaatttgctgtattgttctattttatgtctctatttaactaaggtgctaaaattttaccaaaactgagactcggaagattgcaatatga |
240704 |
T |
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| Q |
284 |
gcaaagtgcaagtcgtattctatattggtaaagtgtctcacaagtcagctatcccatgtgaaataaatcatccaacaccccatattcttcga |
375 |
Q |
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| T |
240705 |
gcaaagtgcaagtcgtattctatattggtaaagtgtctcacaagtcagctatcccatgtgaaataaatcatccaacaccccatatttttcga |
240796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 240396 - 240461
Alignment:
| Q |
19 |
agttatagagatgttttagaaattaacctaaaaaagtggtatcattgagtgcggtgtatacaaatt |
84 |
Q |
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| T |
240396 |
agttatagagatattttagaaattaacccaaaaaagtggtatcattgagtgcggtgtatacaaatt |
240461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 44599522 - 44599484
Alignment:
| Q |
27 |
agatgttttagaaattaacctaaaaaagtggtatcattg |
65 |
Q |
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| T |
44599522 |
agatattttagaaattaacctaaagaagtggtatcattg |
44599484 |
T |
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