View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19530_high_74 (Length: 375)

Name: NF19530_high_74
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19530_high_74
NF19530_high_74
[»] chr3 (4 HSPs)
chr3 (38-358)||(30600187-30600506)
chr3 (70-152)||(15267401-15267484)
chr3 (45-152)||(15095090-15095199)
chr3 (51-124)||(27456365-27456438)
[»] chr6 (2 HSPs)
chr6 (44-122)||(26259880-26259958)
chr6 (281-353)||(24207605-24207677)
[»] chr5 (3 HSPs)
chr5 (42-152)||(10585673-10585783)
chr5 (51-152)||(702531-702632)
chr5 (77-131)||(19841099-19841153)
[»] chr1 (2 HSPs)
chr1 (52-155)||(1848342-1848442)
chr1 (43-127)||(12542907-12542991)
[»] chr4 (3 HSPs)
chr4 (63-135)||(47643040-47643112)
chr4 (199-259)||(29540707-29540767)
chr4 (62-152)||(39956879-39956966)
[»] chr7 (4 HSPs)
chr7 (196-353)||(3126900-3127057)
chr7 (196-259)||(21924861-21924924)
chr7 (201-352)||(28592318-28592469)
chr7 (88-176)||(21924520-21924608)
[»] scaffold0257 (1 HSPs)
scaffold0257 (51-119)||(20622-20690)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 38 - 358
Target Start/End: Complemental strand, 30600506 - 30600187
Alignment:
Q  38 aaggacttagttttttgttggcctatttagattttatcacgtgatgttagtaaagggagttcgaatccataatttgcaacaacaacattgtagcagcata 137  Q
    |||||||||||| |||||||||||||||||| |||||||| |||| ||||||||||||||| |||||| |||||||||||||||||||||||||||  ||    
T  30600506 aaggacttagttctttgttggcctatttagaatttatcacatgattttagtaaagggagtttgaatccctaatttgcaacaacaacattgtagcagtgta 30600407  T
Q  138 taacaaaatagaaagacatgccaaagaaagacaaagttgtgtcatataaccaccccattaatgttcttgatgcatcaattgttgttgtagacatcgatga 237  Q
    ||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30600406 taacaaaatagaaagacataccaaagaaagacaaagttgtgttaaataaccaccccattaatgttcttgatgcatcaattgttgttgtagacatcgatga 30600307  T
Q  238 ccacttcatcactcttttagatgtctttgatccttgaaactatgatattctggatgttaaaaccaaaaatattttaattgaaaaaaggccacttggggca 337  Q
    |||||||||||||||||||||| | |||||  ||||||||| ||||||||| |||||| |||||| |||||||||||||||||||  |||| ||||||||    
T  30600306 ccacttcatcactcttttagatatatttgactcttgaaactgtgatattcttgatgtt-aaaccagaaatattttaattgaaaaattgccaattggggca 30600208  T
Q  338 ttgaatatcacatttcatata 358  Q
    |||||||||||||||||||||    
T  30600207 ttgaatatcacatttcatata 30600187  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 15267484 - 15267401
Alignment:
Q  70 tttatcacgtgatgttagtaaaggga-gttcgaatccataatttgcaacaacaacattgtagcagcatataacaaaatagaaag 152  Q
    ||||||||||||||||| |||| ||| |||| ||||| |||||| ||||||||| ||||||||| | ||||| |||||||||||    
T  15267484 tttatcacgtgatgttattaaaaggaagttcaaatccctaattttcaacaacaatattgtagcaacgtataaaaaaatagaaag 15267401  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 15095199 - 15095090
Alignment:
Q  45 tagttttttgttggcctatttagattttatcacgtgatgtt--agtaaagggagttcgaatccataatttgcaacaacaacattgtagcagcatataaca 142  Q
    ||||| ||| |||||  ||||| | ||||||| ||||||||  | |||||||||||| ||||| |||||| |||||| || ||||||||| | ||||| |    
T  15095199 tagttctttattggctcatttaaaatttatcatgtgatgttttattaaagggagttcaaatccctaattttcaacaataatattgtagcaacgtataaaa 15095100  T
Q  143 aaatagaaag 152  Q
    ||||||||||    
T  15095099 aaatagaaag 15095090  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 27456365 - 27456438
Alignment:
Q  51 tttgttggcctatttagattttatcacgtgatgttagtaaagggagttcgaatccataatttgcaacaacaaca 124  Q
    |||||||||| ||||||| ||||||||| |||| |   ||||||||||| ||||| |||| |||||||| ||||    
T  27456365 tttgttggcccatttagaatttatcacgcgatgctgcaaaagggagttcaaatccctaatatgcaacaataaca 27456438  T

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Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 26259880 - 26259958
Alignment:
Q  44 ttagttttttgttggcctatttagattttatcacgtgatgttagtaaagggagttcgaatccataatttgcaacaacaa 122  Q
    |||||| |||||||||| ||||||| ||||||||||||||| | |||||||||||| ||||| ||||||| ||||||||    
T  26259880 ttagttctttgttggcccatttagaatttatcacgtgatgtcactaaagggagttcaaatccctaatttgaaacaacaa 26259958  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 353
Target Start/End: Original strand, 24207605 - 24207677
Alignment:
Q  281 gatattctggatgttaaaaccaaaaatattttaattgaaaaaaggccacttggggcattgaatatcacatttc 353  Q
    |||||||| |||| || ||||||| | ||||||||||||||| ||||  || ||| ||||||| |||||||||    
T  24207605 gatattcttgatgctacaaccaaagacattttaattgaaaaagggcctattagggaattgaatctcacatttc 24207677  T

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Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 42 - 152
Target Start/End: Original strand, 10585673 - 10585783
Alignment:
Q  42 acttagttttttgttggcctatttagattttatcacgtgatgttagtaaagggagttcgaatccataatttgcaacaacaacattgtagcagcatataac 141  Q
    |||||||||||| |||  ||||||||| ||||||| ||||||||| |||||||||||| ||  | ||||||||||||||  |||||| | ||| |||| |    
T  10585673 acttagttttttattgttctatttagaatttatcatgtgatgttattaaagggagttcaaactcctaatttgcaacaacggcattgttgaagcttatagc 10585772  T
Q  142 aaaatagaaag 152  Q
    |||||||||||    
T  10585773 aaaatagaaag 10585783  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 702531 - 702632
Alignment:
Q  51 tttgttggcctatttagattttatcacgtgatgttagtaaagggagttcgaatccataatttgcaacaacaacattgtagcagcatataacaaaatagaa 150  Q
    |||||||||| |||||||  | |||||||||||||| | || || |||| || || |||||| ||| || |||| |||||| ||||||||||||||||||    
T  702531 tttgttggcccatttagaagtaatcacgtgatgttactcaaaggggttcaaacccctaatttacaataagaacaatgtagcggcatataacaaaatagaa 702630  T
Q  151 ag 152  Q
    ||    
T  702631 ag 702632  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 19841099 - 19841153
Alignment:
Q  77 cgtgatgttagtaaagggagttcgaatccataatttgcaacaacaacattgtagc 131  Q
    |||||||||| |||||||||||| ||||| |||||| |||||||| | |||||||    
T  19841099 cgtgatgttattaaagggagttcaaatccctaattttcaacaacatctttgtagc 19841153  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 1848442 - 1848342
Alignment:
Q  52 ttgttggcctatttagattttatcacgtgatgttagtaaagggagttcgaatccataatttgcaacaacaacattgtagcagcatataacaaaatagaaa 151  Q
    ||||||||| ||||||| |||||||| |||| ||  ||||||||| || ||||| |||||||||||   |||||||||||||| ||||| ||||||||||    
T  1848442 ttgttggcccatttagaatttatcacctgatatttttaaagggagctcaaatccttaatttgcaac---aacattgtagcagcgtataagaaaatagaaa 1848346  T
Q  152 gaca 155  Q
    ||||    
T  1848345 gaca 1848342  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 127
Target Start/End: Original strand, 12542907 - 12542991
Alignment:
Q  43 cttagttttttgttggcctatttagattttatcacgtgatgttagtaaagggagttcgaatccataatttgcaacaacaacattg 127  Q
    ||||||| |||||||| | ||||| | ||||||||||||||||  | |||||||||| |||   |||||||||| ||||||||||    
T  12542907 cttagttctttgttggtccatttaaaatttatcacgtgatgttttttaagggagttcaaatttctaatttgcaaaaacaacattg 12542991  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 47643040 - 47643112
Alignment:
Q  63 tttagattttatcacgtgatgttagtaaagggagttcgaatccataatttgcaacaacaacattgtagcagca 135  Q
    |||||| ||||||| | ||||||| |||||||||||| ||||| |||||||||||||||||| ||||||||||    
T  47643040 tttagaatttatcatgcgatgttactaaagggagttcaaatccttaatttgcaacaacaacaatgtagcagca 47643112  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 29540767 - 29540707
Alignment:
Q  199 tgttcttgatgcatcaattgttgttgtagacatcgatgaccacttcatcactcttttagat 259  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||| ||||| ||| |||||||    
T  29540767 tgttcttgatgcatcaaatgttgatgtaggcatcgatgaccacatcatccctcctttagat 29540707  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 39956879 - 39956966
Alignment:
Q  62 atttagattttatcacgtgatgttagtaaagggagttcgaatccataatttgcaacaacaacattgtagcagcatataacaaaatagaaag 152  Q
    ||||||| |||||||  |||||||| |||||||||||| ||| | ||||||   |||||| ||  ||||||||||||||||||| ||||||    
T  39956879 atttagaatttatcatatgatgttactaaagggagttcaaattcctaattt---acaacagcaaagtagcagcatataacaaaaaagaaag 39956966  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 353
Target Start/End: Original strand, 3126900 - 3127057
Alignment:
Q  196 taatgttcttgatgcatcaattgttgttgtagacatcgatgaccacttcatcactcttttagatgtctttgatccttgaaactatgatattctggatgtt 295  Q
    ||||||| ||||||  |||| | ||| ||||| ||||||||||||||||||| ||| ||||||| | | ||||||| |||| |  |||||||| |||| |    
T  3126900 taatgtttttgatgtttcaaatattgatgtaggcatcgatgaccacttcatctctcctttagatttatatgatcctagaaattgggatattcttgatgct 3126999  T
Q  296 aaaaccaaaaatattttaattgaaaaaaggccacttggggcattgaatatcacatttc 353  Q
    ||||  | | | || |||||| ||||| ||||  ||| || |||||||||||||||||    
T  3127000 aaaaggagacacatgttaattaaaaaagggcctattgaggaattgaatatcacatttc 3127057  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 21924861 - 21924924
Alignment:
Q  196 taatgttcttgatgcatcaattgttgttgtagacatcgatgaccacttcatcactcttttagat 259  Q
    |||||||||| |||| |||||||| | ||||| ||||||||||||||||||| ||| |||||||    
T  21924861 taatgttcttaatgcgtcaattgtagatgtaggcatcgatgaccacttcatccctcctttagat 21924924  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 352
Target Start/End: Complemental strand, 28592469 - 28592318
Alignment:
Q  201 ttcttgatgcatcaattgttgttgtagacatcgatgaccacttcatcactcttttagatgtctttgatccttgaaactatgatattctggatgttaaaac 300  Q
    |||||||||| |||| | ||| |||||  ||| ||||||||||||||  || ||||||| | | |||||||  ||| |  | || ||| |||||||||||    
T  28592469 ttcttgatgcgtcaaatattgatgtaggtatcaatgaccacttcatccatcctttagatatgtatgatcctaaaaattgaggtaatcttgatgttaaaac 28592370  T
Q  301 caaaaatattttaattgaaaaaaggccacttggggcattgaatatcacattt 352  Q
    |||| | ||||||||||||||| | |   || ||| ||||||||||||||||    
T  28592369 caaagacattttaattgaaaaatgtcatgttagggaattgaatatcacattt 28592318  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 21924520 - 21924608
Alignment:
Q  88 taaagggagttcgaatccataatttgcaacaacaacattgtagcagcatataacaaaatagaaagacatgccaaagaaagacaaagttg 176  Q
    |||||||||||| | ||| |||||||||| ||||||| | |  |||  ||||||||||||||||  ||  | |||||||||||||||||    
T  21924520 taaagggagttcaattccctaatttgcaataacaacaatatcacagtgtataacaaaatagaaaagcacacgaaagaaagacaaagttg 21924608  T

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Target: scaffold0257 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 20690 - 20622
Alignment:
Q  51 tttgttggcctatttagattttatcacgtgatgttagtaaagggagttcgaatccataatttgcaacaa 119  Q
    |||||||||| ||||||| ||||||| ||| ||||| |||||||| ||| ||||  |||||||||||||    
T  20690 tttgttggccaatttagaatttatcatgtggtgttactaaagggaattcaaatctctaatttgcaacaa 20622  T

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