View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19530_high_77 (Length: 367)
Name: NF19530_high_77
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_77 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 204 - 339
Target Start/End: Original strand, 23325295 - 23325430
Alignment:
| Q |
204 |
attaatactttgatccctttagccacaatccattttaaatgaatagtgnnnnnnnnntggtgaatcatttagtgataaacaatccaacatcataatgcac |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23325295 |
attaatactttgatccctttagccacaatccattttaaatgaatagtgaaaaaaaaatggtgaatcatttagtgataaacaatccaacatcataatgcac |
23325394 |
T |
|
| Q |
304 |
ataaagaatactaataatgaaacacagtgacaaatg |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
23325395 |
ataaagaatactaataatgaaacacagtgacaaatg |
23325430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 23325086 - 23325260
Alignment:
| Q |
14 |
atcatgatcaaggcattgtctttcttt-cttgacaaaatgatcgagacattgtcggatactaaatatgaacaactctctcaataaaaaatgttgatgcaa |
112 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23325086 |
atcatgatcaaggcattgtcttttttttcttgacaaaatgatcgagacattgtcggatactaaatatgaacaactctctcaataaaaaatgttgatgcaa |
23325185 |
T |
|
| Q |
113 |
agtata-------------tttaaaatcaatgttgatgcacaaaaaattataacatccacccaattttactgagat |
175 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
23325186 |
agtatattagtatttgtcgttaaaaatcaatgttgatgcacaaaaaattacaacatccacccaa-tttactgagat |
23325260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University