View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_8 (Length: 687)
Name: NF19530_high_8
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 598; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 12 - 669
Target Start/End: Complemental strand, 38307448 - 38306790
Alignment:
| Q |
12 |
atgaagcattgattgattannnnnnngaagaaagcattaatcgattttgatcacgttagaataggaaataaatgtattacaatgagcgtcaaatgtgcta |
111 |
Q |
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| T |
38307448 |
atgaagcattgattgattatttttttgaagaaagcattaatcgattttgatcacgttagaataggaaataaatgtattacaatgagcgttaaatgtgcta |
38307349 |
T |
|
| Q |
112 |
gctgtggcagctgtagcagtaagagtagtgatatcatcatgagctgatcacagaaacaaggtggtcgcactcagcccccattgcttcagcagcctccact |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38307348 |
gctgtggcagctgtagcagtaagagtagtgatatcatcatgagctgatcacggaaacaaggtggtcgcactcagcccccattgcttcagcagcctccact |
38307249 |
T |
|
| Q |
212 |
cattgcgcttccagtaatgttgcagctgaagcaacagccatgtcagttttgggcattgtctcgcccttgtttggtgttgatgaggcaactgtggtagcca |
311 |
Q |
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| T |
38307248 |
cattgtgcttccagtaatgttgcagctgaagcaacagccatgtcagttttgggcattgtctcgcccttgtttggtgttgatgaggcaactgtggtagccg |
38307149 |
T |
|
| Q |
312 |
caatggttgttattgcgcttccgctttcaaccatcttcccaccattaaactaatggctttctcaaaggccatgaaagcttggtaaatggtaatcataata |
411 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38307148 |
caatggttgttattgcgcttcctctttcaaccatcttcccaccattaaactaatggttttctcaaaggccatgaaagcttggtaaatggtaatcataata |
38307049 |
T |
|
| Q |
412 |
gaatctaaggctttctcagtttcttttagttgggagaatattttagaaacagagagaatgaatgaatttaaagagattgaaaacaaaaaa-ggatggatg |
510 |
Q |
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| T |
38307048 |
gaatctaaggctttctcagtttcttttagttgggagaatattttagaaacagagagaatgaatgaatttaaagagattgaaaacaaaaaagggatggatg |
38306949 |
T |
|
| Q |
511 |
ggacctccgtaattaaaaagattacaaggaagatagtgtaaaaatcatgataagaacagattttttcacgtatccatatccaggcatgtcatgatacaac |
610 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
38306948 |
ggacctccgtaattaaaaagattacaaggaagatagtgtaaaaatcatgataagaacagattttttcacgtttccatatccaggcatgtcatgttacaac |
38306849 |
T |
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| Q |
611 |
ctgctaagtcttatgggtgcagttcaaactatatattatatcaagaatattatgactcc |
669 |
Q |
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| T |
38306848 |
ctgctaagtcttatgggtgcagttcaaactatatattatatcaagaatattatgactcc |
38306790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 294
Target Start/End: Complemental strand, 38268679 - 38268536
Alignment:
| Q |
151 |
tgagctgatcacagaaacaaggtggtcgcactcagcccccattgcttcagcagcctccactcattgcgcttccagtaatgttgcagctgaagcaacagcc |
250 |
Q |
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|||||||| ||| || |||||||||||| |||||| ||||||||||| ||||||||||| ||||| || | | || || ||||| |||||||||||| |
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| T |
38268679 |
tgagctgaccaccgatgcaaggtggtcgcgctcagctcccattgcttcggcagcctccacacattgtgcggcaactagagtggcagccgaagcaacagcc |
38268580 |
T |
|
| Q |
251 |
atgtcagttttgggcattgtctcgcccttgtttggtgttgatga |
294 |
Q |
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| ||| || |||| ||| |||| |||||||| |||||||||| |
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| T |
38268579 |
acgtctgtcttggccatcttctcatccttgttttgtgttgatga |
38268536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 38268737 - 38268696
Alignment:
| Q |
113 |
ctgtggcagctgtagcagtaagagtagtgatatcatcatgag |
154 |
Q |
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| T |
38268737 |
ctgtggcagctgcagcagtaagagtagtgatatcatcatgag |
38268696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 404 - 499
Target Start/End: Original strand, 38154585 - 38154678
Alignment:
| Q |
404 |
tcataatagaatctaaggctttctcagtttcttttagttgggagaatattttagaaacagagagaatgaatgaatttaaagagattgaaaacaaaa |
499 |
Q |
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|||||||||||| ||| ||| ||||| ||||||| ||| || | | ||||||||||||| |||| ||||| ||||||| |||||||||| |||| |
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| T |
38154585 |
tcataatagaatataatgct--ctcagattcttttggttaagatactgttttagaaacagaaagaaggaatggatttaaatagattgaaaagaaaa |
38154678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 31707355 - 31707396
Alignment:
| Q |
113 |
ctgtggcagctgtagcagtaagagtagtgatatcatcatgag |
154 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||| |
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| T |
31707355 |
ctgtggcagctgcagcagttagagtagtgatatcatcatgag |
31707396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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