View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19530_high_87 (Length: 353)

Name: NF19530_high_87
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19530_high_87
NF19530_high_87
[»] chr3 (2 HSPs)
chr3 (24-341)||(3810155-3810453)
chr3 (214-301)||(1329564-1329651)
[»] chr7 (2 HSPs)
chr7 (195-283)||(45489216-45489304)
chr7 (214-301)||(42539903-42539990)
[»] chr6 (1 HSPs)
chr6 (195-271)||(8187133-8187209)
[»] chr5 (1 HSPs)
chr5 (225-289)||(40286926-40286990)


Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 24 - 341
Target Start/End: Original strand, 3810155 - 3810453
Alignment:
Q  24 actatagaaaggaaacctataacttctgtgacaagagaggtgaataaaactttcatgatgagcaaaatcttaccagcccttaagaattgctggccaatag 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3810155 actatagaaaggaaacctataacttctgtgacaagagaggtgaataaaactttcatgatgagcaaaatcttaccagcccttaagaattgctggccaatag 3810254  T
Q  124 aagatgtagggaagacaattttcattcaacaagacaatgcaaagtctcatatttctaaagatgatcctgatttttgtcgagcagcaagtgaagatgggtt 223  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3810255 aagatgtagggaagacaattttcattcaacaagagaatgcaaagtctcatatttctaaagatgatcctgatttttgtcgagcagcaagtgaagatgggtt 3810354  T
Q  224 tgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattcagtctttacagcagaaagaatca 323  Q
    ||                   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3810355 tg-------------------acctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattcagtatttacagcagaaagaatca 3810435  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 301
Target Start/End: Original strand, 1329564 - 1329651
Alignment:
Q  214 aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca 301  Q
    |||||||||| ||||||||| |||| ||||||||||| ||||| || ||  | |||||||| ||| | ||||| |||| |||||||||    
T  1329564 aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca 1329651  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 45489216 - 45489304
Alignment:
Q  195 ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttggg 283  Q
    |||||| |||||||   ||||| ||||||||||||||||||||| |||||||| || || || |||||||||||||| ||||| |||||    
T  45489216 ttttgtagagcagcttctgaaggtgggtttgacattcgattgatatgtcaaccacctaactctcccgatttgaatgttttggatttggg 45489304  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 301
Target Start/End: Complemental strand, 42539990 - 42539903
Alignment:
Q  214 aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca 301  Q
    |||||||||| ||||||||| |||| ||||||||||| ||||| || ||  | |||||||| ||| | ||||| |||| |||||||||    
T  42539990 aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca 42539903  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 8187133 - 8187209
Alignment:
Q  195 ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgt 271  Q
    |||||| |||||||   ||||| ||||||||||||||||||||| ||| |||  || ||||| ||||||||||||||    
T  8187133 ttttgtagagcagcttttgaaggtgggtttgacattcgattgatatgttaacgacctaattctcccgatttgaatgt 8187209  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 40286990 - 40286926
Alignment:
Q  225 gacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggcttttt 289  Q
    |||||||| |||| || ||||||||| ||||| ||||||||||| || ||||| || ||||||||    
T  40286990 gacattcgtttgacttttcaacctcctaattctcccgatttgaacgtattggatttaggcttttt 40286926  T

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