View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19530_high_88 (Length: 345)
Name: NF19530_high_88
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_88 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 325
Target Start/End: Complemental strand, 228752 - 228440
Alignment:
| Q |
13 |
aaaataaaaggggagagagggggtccccctgcctcacccctctcttgcaatggaaataaccctcttgaccgccattaatattgattgaaagagttgcaga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
228752 |
aaaataaaaggggagagagggggtccccctgcctcacccctctcttgcaatggaaataaccctattgactgccattaatattgattgaaagagttgcaga |
228653 |
T |
|
| Q |
113 |
gttaagaatcacctctatccatttgcaaaaaatttcattaaaaccaaaacacttgagaactgaaagaagaaagctccaatcaagggtatcaaatgcttta |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
228652 |
gttaagaatcacctctatccatttgcaaaaaatttcattaaaaccaagacacttgagaactgaaagaagaaagctccaatcaagggtatcaaatgcttta |
228553 |
T |
|
| Q |
213 |
gagatattaatctttaaagccaggttcccccaaatgctttcttatgaagaagatttgcagcttctgatgctaagcagatgcaatccttaatgttacttcc |
312 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
228552 |
gagatatcaatctttaaagccaggttcccccaaatgctttcttatgaagaagatttgcagcttctgatgctaaacagatgcaatccttaatgttacttcc |
228453 |
T |
|
| Q |
313 |
ttgtattaaaccc |
325 |
Q |
| |
|
||||||||||||| |
|
|
| T |
228452 |
ttgtattaaaccc |
228440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 28337449 - 28337486
Alignment:
| Q |
129 |
atccatttgcaaaaaatttcattaaaaccaaaacactt |
166 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28337449 |
atccatttgcaaaaaatatcattaaaaccaaaacactt |
28337486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University