View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19530_high_9 (Length: 627)

Name: NF19530_high_9
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19530_high_9
NF19530_high_9
[»] chr3 (9 HSPs)
chr3 (278-614)||(30666124-30666466)
chr3 (402-448)||(1395610-1395655)
chr3 (409-447)||(2128344-2128381)
chr3 (401-451)||(45535367-45535416)
chr3 (248-289)||(40294796-40294837)
chr3 (404-444)||(905058-905097)
chr3 (403-447)||(20192693-20192736)
chr3 (403-447)||(40122839-40122882)
chr3 (403-443)||(49587003-49587042)
[»] chr4 (6 HSPs)
chr4 (402-442)||(24371039-24371079)
chr4 (403-447)||(51044546-51044589)
chr4 (403-447)||(52645836-52645879)
chr4 (409-447)||(6364089-6364126)
chr4 (409-447)||(25487638-25487675)
chr4 (403-447)||(47970258-47970301)
[»] chr1 (7 HSPs)
chr1 (403-447)||(23895276-23895319)
chr1 (404-447)||(17423026-17423069)
chr1 (404-447)||(50319232-50319274)
chr1 (402-447)||(36151591-36151635)
chr1 (402-442)||(26293192-26293231)
chr1 (403-447)||(43029488-43029531)
chr1 (403-447)||(48282073-48282117)
[»] chr7 (13 HSPs)
chr7 (402-447)||(24973884-24973928)
chr7 (402-447)||(49060480-49060524)
chr7 (403-449)||(5006596-5006641)
chr7 (409-446)||(28178910-28178946)
chr7 (410-447)||(33894563-33894599)
chr7 (402-447)||(35536047-35536091)
chr7 (402-443)||(42656459-42656499)
chr7 (403-447)||(1423086-1423129)
chr7 (413-449)||(6977384-6977420)
chr7 (403-447)||(31341134-31341177)
chr7 (253-289)||(34464141-34464177)
chr7 (411-447)||(35808999-35809034)
chr7 (409-445)||(43152995-43153030)
[»] scaffold0590 (1 HSPs)
scaffold0590 (403-447)||(1161-1204)
[»] scaffold0275 (1 HSPs)
scaffold0275 (403-447)||(2771-2814)
[»] chr5 (10 HSPs)
chr5 (403-447)||(7096214-7096257)
chr5 (401-445)||(12595536-12595579)
chr5 (409-447)||(12407754-12407791)
chr5 (409-447)||(13224369-13224406)
chr5 (410-447)||(12460094-12460130)
chr5 (402-447)||(39128579-39128623)
chr5 (407-443)||(5563648-5563683)
chr5 (420-448)||(10771981-10772009)
chr5 (403-447)||(35135749-35135792)
chr5 (403-447)||(37063161-37063204)
[»] chr6 (9 HSPs)
chr6 (250-289)||(1231216-1231255)
chr6 (402-447)||(24836285-24836329)
chr6 (402-447)||(29274315-29274359)
chr6 (403-447)||(2514642-2514685)
chr6 (403-447)||(4247722-4247764)
chr6 (403-447)||(4420557-4420600)
chr6 (407-447)||(10016485-10016524)
chr6 (403-447)||(10452447-10452490)
chr6 (403-447)||(33500568-33500611)
[»] chr8 (7 HSPs)
chr8 (252-326)||(10075472-10075546)
chr8 (409-447)||(26215436-26215473)
chr8 (409-447)||(26813897-26813935)
chr8 (409-447)||(42597341-42597378)
chr8 (402-447)||(14482142-14482186)
chr8 (402-446)||(1470942-1470985)
chr8 (403-447)||(39392748-39392791)
[»] chr2 (9 HSPs)
chr2 (409-447)||(5133712-5133749)
chr2 (402-443)||(31461382-31461422)
chr2 (403-443)||(17952788-17952827)
chr2 (401-449)||(19629237-19629284)
chr2 (401-449)||(19826138-19826185)
chr2 (403-443)||(32098395-32098434)
chr2 (403-447)||(37033984-37034027)
chr2 (403-447)||(38239638-38239681)
chr2 (402-446)||(40837514-40837557)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 278 - 614
Target Start/End: Complemental strand, 30666466 - 30666124
Alignment:
Q  278 tctattgacatatatgcttgcgagactatttaggggagcttatgaaaataaacgatgtctataagatgttgtcnnnnnnnn------cgataagcactgc 371  Q
    ||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||              ||||||||||| |    
T  30666466 tctattgacgtatacgcttgcgagactatttaggagagcttatgaaaataaacgatgtctataagatgttgtctttttttttctttccgataagcactcc 30666367  T
Q  372 aagatagcgtacaaaagcagtttatggcttatttgaatttattttatctttttgttatagaaatagcttatacatatacgatcaacgtttatgctataag 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30666366 aagatagcgtacaaaagcagtttatggcttatttgaatttattttatctttttgttatagaaatagcttatacatatacgatcaatgtttatgctataag 30666267  T
Q  472 gtcttaataaacttattgtgcaaacatggcctaattcaagtgcttatttcatgaagcaagaccaaagaagctcttccaaatatgctcagtatatagcata 571  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30666266 gtcttaataaacttattgtgcaaacatggcctaattcaagtgcttatttcatgaagcaagaccaaagaagctcttccaaatatgctcagtatatagcata 30666167  T
Q  572 tgttgtgctacataatcttctaactaatttgatgttgaaattg 614  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  30666166 tgttgtgctacataatcttctacataatttgatgttgaaattg 30666124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 448
Target Start/End: Complemental strand, 1395655 - 1395610
Alignment:
Q  402 atttgaatttattttatctttttgttatagaaatagcttatacatat 448  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||    
T  1395655 atttgactttattttatctttt-gttatagaaatagcttatacatat 1395610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 2128344 - 2128381
Alignment:
Q  409 tttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  2128344 tttattttatctttt-gttatagaaatagcttatacata 2128381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 401 - 451
Target Start/End: Original strand, 45535367 - 45535416
Alignment:
Q  401 tatttgaatttattttatctttttgttatagaaatagcttatacatatacg 451  Q
    ||||||| |||| ||||| ||||||||||||||||||||| ||||||||||    
T  45535367 tatttgactttaatttat-tttttgttatagaaatagcttctacatatacg 45535416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 40294837 - 40294796
Alignment:
Q  248 gacatgttttgattcatttatttgagtttatctattgacata 289  Q
    ||||||||| |||| |||||||||||||||| ||||||||||    
T  40294837 gacatgtttagattgatttatttgagtttatttattgacata 40294796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 444
Target Start/End: Original strand, 905058 - 905097
Alignment:
Q  404 ttgaatttattttatctttttgttatagaaatagcttatac 444  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  905058 ttgactttattttatctttt-gttatagaaatagcttatac 905097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 20192693 - 20192736
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||    
T  20192693 tttgactttattttatctttt-gttatataaatagcttatacata 20192736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 40122839 - 40122882
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||| ||||||||||||||| ||||| |||||||||||||||||    
T  40122839 tttgactttattttatctttt-gttattgaaatagcttatacata 40122882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 443
Target Start/End: Original strand, 49587003 - 49587042
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttata 443  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  49587003 tttgactttattttatctttt-gttatagaaatagcttata 49587042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 442
Target Start/End: Original strand, 24371039 - 24371079
Alignment:
Q  402 atttgaatttattttatctttttgttatagaaatagcttat 442  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  24371039 atttgaatttattttatcttttggttatagaaatagcttat 24371079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 51044546 - 51044589
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||    
T  51044546 tttgactttattttatctttt-gttatagaaatagcttatacata 51044589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 52645836 - 52645879
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    |||||||| |||||||||||| |||||||||||||||||||||||    
T  52645836 tttgaattgattttatctttt-gttatagaaatagcttatacata 52645879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 6364126 - 6364089
Alignment:
Q  409 tttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  6364126 tttattttatctttt-gttatagaaatagcttatacata 6364089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 25487638 - 25487675
Alignment:
Q  409 tttattttatctttttgttatagaaatagcttatacata 447  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  25487638 tttattttat-tttttgttatagaaatagcttatacata 25487675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 47970301 - 47970258
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||| || |||||||||||| |||||||||||||||||||||||    
T  47970301 tttgacttcattttatctttt-gttatagaaatagcttatacata 47970258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 23895319 - 23895276
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  23895319 tttgaatttattttatctttt-gttatagaaatagcttatacata 23895276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 447
Target Start/End: Original strand, 17423026 - 17423069
Alignment:
Q  404 ttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    |||| ||||||||||| |||||||||||||| ||||||||||||    
T  17423026 ttgactttattttatcgttttgttatagaaaaagcttatacata 17423069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 447
Target Start/End: Complemental strand, 50319274 - 50319232
Alignment:
Q  404 ttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    |||| ||||||||||||||| |||||||||||||||||||||||    
T  50319274 ttgactttattttatctttt-gttatagaaatagcttatacata 50319232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Original strand, 36151591 - 36151635
Alignment:
Q  402 atttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    |||||| ||||||||||||||| ||||| |||||||||||||||||    
T  36151591 atttgactttattttatctttt-gttattgaaatagcttatacata 36151635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 402 - 442
Target Start/End: Original strand, 26293192 - 26293231
Alignment:
Q  402 atttgaatttattttatctttttgttatagaaatagcttat 442  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  26293192 atttgactttatttta-ctttttgttatagaaatagcttat 26293231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 43029488 - 43029531
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||||||||||||||| ||||||| ||||||||| |||||||||    
T  43029488 tttgaatttattttatc-ttttgttgtagaaataggttatacata 43029531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 48282117 - 48282073
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||| |||||||||||||| | ||||||||||||||| ||||||    
T  48282117 tttgactttattttatctttcttttatagaaatagcttttacata 48282073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 24973928 - 24973884
Alignment:
Q  402 atttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||    
T  24973928 atttgaatttattttatctttt-gttatagaaatagcttttacata 24973884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 49060524 - 49060480
Alignment:
Q  402 atttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||    
T  49060524 atttgactttattttat-tttttgttatagaaatagcttatacata 49060480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 449
Target Start/End: Original strand, 5006596 - 5006641
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacatata 449  Q
    ||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  5006596 tttgactttattttatctttt-gttataggaatagcttatacatata 5006641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 446
Target Start/End: Complemental strand, 28178946 - 28178910
Alignment:
Q  409 tttattttatctttttgttatagaaatagcttatacat 446  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  28178946 tttattttatctttt-gttatagaaatagcttatacat 28178910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 447
Target Start/End: Complemental strand, 33894599 - 33894563
Alignment:
Q  410 ttattttatctttttgttatagaaatagcttatacata 447  Q
    |||||||||||||| |||||||||||||||||||||||    
T  33894599 ttattttatctttt-gttatagaaatagcttatacata 33894563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 35536091 - 35536047
Alignment:
Q  402 atttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    |||||| ||||||||||||| | |||||||||||||||||||||||    
T  35536091 atttgactttattttatcttat-gttatagaaatagcttatacata 35536047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 42656499 - 42656459
Alignment:
Q  402 atttgaatttattttatctttttgttatagaaatagcttata 443  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  42656499 atttgactttattttatctttt-gttatagaaatagcttata 42656459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 1423129 - 1423086
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||    
T  1423129 tttgaatttattttatc-ttttgttatgaaaatagcttatacata 1423086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 413 - 449
Target Start/End: Complemental strand, 6977420 - 6977384
Alignment:
Q  413 ttttatctttttgttatagaaatagcttatacatata 449  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  6977420 ttttatctttttgttatagaattagcttacacatata 6977384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 31341177 - 31341134
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||    
T  31341177 tttgactttattttatctttt-gttatacaaatagcttatacata 31341134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 34464141 - 34464177
Alignment:
Q  253 gttttgattcatttatttgagtttatctattgacata 289  Q
    |||| |||| |||||||||||||||||||||||||||    
T  34464141 gtttggattgatttatttgagtttatctattgacata 34464177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 35808999 - 35809034
Alignment:
Q  411 tattttatctttttgttatagaaatagcttatacata 447  Q
    ||||||||||||| |||||||||||||||||||||||    
T  35808999 tattttatctttt-gttatagaaatagcttatacata 35809034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 445
Target Start/End: Original strand, 43152995 - 43153030
Alignment:
Q  409 tttattttatctttttgttatagaaatagcttataca 445  Q
    ||||||||||||||| |||||||||||||||||||||    
T  43152995 tttattttatctttt-gttatagaaatagcttataca 43153030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 1161 - 1204
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||    
T  1161 tttgactttattttatctttt-gttatagaaatagcttatacata 1204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 2814 - 2771
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||    
T  2814 tttgactttattttatctttt-gttatagaaatagcttatacata 2771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 7096214 - 7096257
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||    
T  7096214 tttgactttattttatctttt-gttatagaaatagcttatacata 7096257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 401 - 445
Target Start/End: Original strand, 12595536 - 12595579
Alignment:
Q  401 tatttgaatttattttatctttttgttatagaaatagcttataca 445  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||    
T  12595536 tatttgaatttattttatc-ttttgctatagaaatagcttataca 12595579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 12407754 - 12407791
Alignment:
Q  409 tttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  12407754 tttattttatctttt-gttatagaaatagcttatacata 12407791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 13224406 - 13224369
Alignment:
Q  409 tttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  13224406 tttattttatctttt-gttatagaaatagcttatacata 13224369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 447
Target Start/End: Original strand, 12460094 - 12460130
Alignment:
Q  410 ttattttatctttttgttatagaaatagcttatacata 447  Q
    |||||||||||||| |||||||||||||||||||||||    
T  12460094 ttattttatctttt-gttatagaaatagcttatacata 12460130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 39128623 - 39128579
Alignment:
Q  402 atttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    |||||| ||||||||||||||| ||||||||| |||||||||||||    
T  39128623 atttgactttattttatctttt-gttatagaattagcttatacata 39128579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 407 - 443
Target Start/End: Complemental strand, 5563683 - 5563648
Alignment:
Q  407 aatttattttatctttttgttatagaaatagcttata 443  Q
    ||||||||||||||||| |||||||||||||||||||    
T  5563683 aatttattttatctttt-gttatagaaatagcttata 5563648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 420 - 448
Target Start/End: Original strand, 10771981 - 10772009
Alignment:
Q  420 tttttgttatagaaatagcttatacatat 448  Q
    |||||||||||||||||||||||||||||    
T  10771981 tttttgttatagaaatagcttatacatat 10772009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 35135749 - 35135792
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||| ||||||||||||||| |||||||||||| ||||||||||    
T  35135749 tttgactttattttatctttt-gttatagaaatatcttatacata 35135792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 37063161 - 37063204
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||| ||||||||||||||| ||||||||||||| |||||||||    
T  37063161 tttgactttattttatctttt-gttatagaaatagtttatacata 37063204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 1231216 - 1231255
Alignment:
Q  250 catgttttgattcatttatttgagtttatctattgacata 289  Q
    ||||||| |||| |||||||||||||||||||||||||||    
T  1231216 catgtttggattgatttatttgagtttatctattgacata 1231255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Original strand, 24836285 - 24836329
Alignment:
Q  402 atttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    |||||| ||||||||||||||| |||||||||||| ||||||||||    
T  24836285 atttgactttattttatctttt-gttatagaaataacttatacata 24836329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Original strand, 29274315 - 29274359
Alignment:
Q  402 atttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    |||||| ||||||||||||||| | |||||||||||||||||||||    
T  29274315 atttgactttattttatctttt-gctatagaaatagcttatacata 29274359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 2514685 - 2514642
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||| |||||||||||||||  ||||||||||||||||||||||    
T  2514685 tttgactttattttatctttta-ttatagaaatagcttatacata 2514642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 4247722 - 4247764
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||    
T  4247722 tttgaattt-ttttatctttt-gttatagaaatagcttatacata 4247764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 4420600 - 4420557
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||| ||||||||||||||| ||||||||| |||||||||||||    
T  4420600 tttgactttattttatctttt-gttatagaagtagcttatacata 4420557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 407 - 447
Target Start/End: Complemental strand, 10016524 - 10016485
Alignment:
Q  407 aatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  10016524 aatttattttatcttttggtt-tagaaatagcttatacata 10016485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 10452447 - 10452490
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||| |||||||||| |||| |||||||||||||||||||||||    
T  10452447 tttgattttattttatatttt-gttatagaaatagcttatacata 10452490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 33500568 - 33500611
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||| |||| |||||||||| |||||||||||||||||||||||    
T  33500568 tttgattttactttatctttt-gttatagaaatagcttatacata 33500611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 326
Target Start/End: Original strand, 10075472 - 10075546
Alignment:
Q  252 tgttttgattcatttatttgagtttatctattgacatatatgcttgcgagactatttaggggagcttatgaaaat 326  Q
    ||||| |||| | ||||||||||||||||| || |||| || ||||||||||| |||| | ||||||||| ||||    
T  10075472 tgtttcgattaacttatttgagtttatctactggcataaatacttgcgagactgtttaagagagcttatggaaat 10075546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 26215473 - 26215436
Alignment:
Q  409 tttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  26215473 tttattttatctttt-gttatagaaatagcttatacata 26215436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 26813897 - 26813935
Alignment:
Q  409 tttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  26813897 tttattttatctttttgttatagaaataatttatacata 26813935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 42597378 - 42597341
Alignment:
Q  409 tttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  42597378 tttattttatctttt-gttatagaaatagcttatacata 42597341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 14482186 - 14482142
Alignment:
Q  402 atttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    |||||| ||||||||||||||| ||||||||||||| |||||||||    
T  14482186 atttgactttattttatctttt-gttatagaaatagtttatacata 14482142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 1470942 - 1470985
Alignment:
Q  402 atttgaatttattttatctttttgttatagaaatagcttatacat 446  Q
    |||||| |||||||||||||||  |||||||||||||||||||||    
T  1470942 atttgactttattttatctttta-ttatagaaatagcttatacat 1470985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 39392748 - 39392791
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||| ||||||||||||||| ||||||||||||| |||||||||    
T  39392748 tttgactttattttatctttt-gttatagaaatagtttatacata 39392791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 5133749 - 5133712
Alignment:
Q  409 tttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  5133749 tttattttatctttt-gttatagaaatagcttatacata 5133712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 31461422 - 31461382
Alignment:
Q  402 atttgaatttattttatctttttgttatagaaatagcttata 443  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  31461422 atttgactttattttatctttt-gttatagaaatagcttata 31461382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 443
Target Start/End: Original strand, 17952788 - 17952827
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttata 443  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  17952788 tttgactttattttatctttt-gttatagaaatagcttata 17952827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 401 - 449
Target Start/End: Complemental strand, 19629284 - 19629237
Alignment:
Q  401 tatttgaatttattttatctttttgttatagaaatagcttatacatata 449  Q
    ||||||| |||| ||||| ||||||||||||||||||||| ||||||||    
T  19629284 tatttgactttaatttat-tttttgttatagaaatagcttctacatata 19629237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 401 - 449
Target Start/End: Complemental strand, 19826185 - 19826138
Alignment:
Q  401 tatttgaatttattttatctttttgttatagaaatagcttatacatata 449  Q
    ||||||| |||| ||||| ||||||||||||||||||||| ||||||||    
T  19826185 tatttgactttaatttat-tttttgttatagaaatagcttctacatata 19826138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 443
Target Start/End: Original strand, 32098395 - 32098434
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttata 443  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  32098395 tttgactttattttatctttt-gttatagaaatagcttata 32098434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 37034027 - 37033984
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||| |||||||||||||||| |||||||||||| |||||||||    
T  37034027 tttgactttattttatcttttt-ttatagaaatagtttatacata 37033984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 38239638 - 38239681
Alignment:
Q  403 tttgaatttattttatctttttgttatagaaatagcttatacata 447  Q
    ||||| || |||||||||||| |||||||||||||||||||||||    
T  38239638 tttgacttgattttatctttt-gttatagaaatagcttatacata 38239681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 40837514 - 40837557
Alignment:
Q  402 atttgaatttattttatctttttgttatagaaatagcttatacat 446  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||    
T  40837514 atttgactttaatttatctttt-gttatagaaatagcttatacat 40837557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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